BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0152.0027.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1342 [ET] COG0834 ABC-type amino acid transport/signal transdu... 239 7e-63 ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduc... 235 1e-61 ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transd... 235 1e-61 RSp1140 [ET] COG0834 ABC-type amino acid transport/signal transd... 234 2e-61 STM0665 [ET] COG0834 ABC-type amino acid transport/signal transd... 233 4e-61 >PA1342 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 302 Score = 239 bits (609), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/269 (44%), Positives = 170/269 (63%), Gaps = 2/269 (0%) Query: 23 TLDNIKSKRVITIGYREASIPFSYLGADQ-KPVGFSLDLCAHVVDRLKVDLRTPDIQIKL 81 TL IK IT+G+R+ASIPFSYLG + KP+G+S DL VV+ +K +L P+++++ Sbjct: 29 TLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVVEAVKKELNLPELKVRY 88 Query: 82 TPVNSSNRIPLIQNGTIDIECGGTASNKQRLEQVSFSVATFASQTAWLAKASSGLKTPKD 141 V S RIPL+QNGT+DIECG T +N++R +QV FSV F T L+K ++ +K D Sbjct: 89 NLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGTRLLSKKTANIKDFDD 148 Query: 142 LKGKTVVVTQGSDALGIAKGISQEDDLNLTIAQAKDHAESLLLLTTGRVAAWVEADILLA 201 LKGK VV T G+ + + K ++ + + + I AKDH ES ++L +GR A++ D LL Sbjct: 149 LKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLESGRAVAFMMDDALLY 208 Query: 202 GMKADYSKPADLIFLKANYGTIYYYGLMFSKDDPDFKKLVDDVLSKLMASGEFTKIYDKW 261 G A KP D + + + YG M K D FKK+VD ++ ASGE KIYDKW Sbjct: 209 GEMAKAKKPDDWV-VGGTPQSFEIYGCMVRKGDAAFKKVVDKAITDTYASGEVNKIYDKW 267 Query: 262 FVAAIPPKNINLNFPMTDALKERVAHPSD 290 F IPPK +NLNFPM++ LK+ +A P+D Sbjct: 268 FTQPIPPKGLNLNFPMSEELKKLIASPTD 296 >ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain EcZ Escherichia coli O157:H7 EDL933 Length = 302 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 163/270 (60%), Gaps = 1/270 (0%) Query: 21 GPTLDNIKSKRVITIGYREASIPFSYLGADQKPVGFSLDLCAHVVDRLKVDLRTPDIQIK 80 G TLD I VI +G+RE+S+PFSY QK VG+S D +V+ +K L PD+Q+K Sbjct: 30 GSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK 89 Query: 81 LTPVNSSNRIPLIQNGTIDIECGGTASNKQRLEQVSFSVATFASQTAWLAKASSGLKTPK 140 L P+ S NRIPL+QNGT D ECG T +N +R +Q +FS F T L K +K Sbjct: 90 LIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFA 149 Query: 141 DLKGKTVVVTQGSDALGIAKGISQEDDLNLTIAQAKDHAESLLLLTTGRVAAWVEADILL 200 DLKGK VVVT G+ + + +++E +N+ I AKDH +S L +GR A++ D LL Sbjct: 150 DLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALL 209 Query: 201 AGMKADYSKPADLIFLKANYGTIYYYGLMFSKDDPDFKKLVDDVLSKLMASGEFTKIYDK 260 AG +A KP + + + YG M KDDP FKKL+DD ++++ SGE K +DK Sbjct: 210 AGERAKAKKPDNWDIV-GKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDK 268 Query: 261 WFVAAIPPKNINLNFPMTDALKERVAHPSD 290 WF IPPKN+N+NF ++D +K P+D Sbjct: 269 WFKNPIPPKNLNMNFELSDEMKALFKEPND 298 >ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ecs Escherichia coli O157:H7 Length = 302 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 163/270 (60%), Gaps = 1/270 (0%) Query: 21 GPTLDNIKSKRVITIGYREASIPFSYLGADQKPVGFSLDLCAHVVDRLKVDLRTPDIQIK 80 G TLD I VI +G+RE+S+PFSY QK VG+S D +V+ +K L PD+Q+K Sbjct: 30 GSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK 89 Query: 81 LTPVNSSNRIPLIQNGTIDIECGGTASNKQRLEQVSFSVATFASQTAWLAKASSGLKTPK 140 L P+ S NRIPL+QNGT D ECG T +N +R +Q +FS F T L K +K Sbjct: 90 LIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFA 149 Query: 141 DLKGKTVVVTQGSDALGIAKGISQEDDLNLTIAQAKDHAESLLLLTTGRVAAWVEADILL 200 DLKGK VVVT G+ + + +++E +N+ I AKDH +S L +GR A++ D LL Sbjct: 150 DLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALL 209 Query: 201 AGMKADYSKPADLIFLKANYGTIYYYGLMFSKDDPDFKKLVDDVLSKLMASGEFTKIYDK 260 AG +A KP + + + YG M KDDP FKKL+DD ++++ SGE K +DK Sbjct: 210 AGERAKAKKPDNWDIV-GKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDK 268 Query: 261 WFVAAIPPKNINLNFPMTDALKERVAHPSD 290 WF IPPKN+N+NF ++D +K P+D Sbjct: 269 WFKNPIPPKNLNMNFELSDEMKALFKEPND 298 >RSp1140 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 298 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 175/276 (63%), Gaps = 1/276 (0%) Query: 15 ISTAQAGPTLDNIKSKRVITIGYREASIPFSYLGADQKPVGFSLDLCAHVVDRLKVDLRT 74 ++ + PTLD+IK+ I + +RE+S+PFSYL A+ KP+G+S+DLC +VD ++ +L+ Sbjct: 20 VNAVASSPTLDHIKATGAIRLAHRESSVPFSYLDANGKPIGYSMDLCMRLVDAIRDNLKR 79 Query: 75 PDIQIKLTPVNSSNRIPLIQNGTIDIECGGTASNKQRLEQVSFSVATFASQTAWLAKASS 134 PD++++ V + R+ I +G D+EC T + ++R E+V+F++ + + L K +S Sbjct: 80 PDLKVQYLQVTPATRMDAIMSGKADLECASTNNARERREKVAFTIPHYIANGRMLVKTAS 139 Query: 135 GLKTPKDLKGKTVVVTQGSDALGIAKGISQEDDLNLTIAQAKDHAESLLLLTTGRVAAWV 194 G+ +DL+GKTVV T+GS + + +S+ L +T+ +A DH ES +L G+ A+ Sbjct: 140 GIHQLEDLRGKTVVSTRGSANGNLVRQLSEAGGLGITVVEAGDHGESFAMLAEGKAQAFA 199 Query: 195 EADILLAGMKADYSKPADLIFLKANYGTIYYYGLMFSKDDPDFKKLVDDVLSKLMASGEF 254 D+LLAGMKA+ PAD + + Y +M SK+DP+FKKL+D +S+LM GE Sbjct: 200 MDDVLLAGMKANAKNPADYAIV-GKTQQVVPYAIMLSKNDPEFKKLIDAAMSRLMEDGEA 258 Query: 255 TKIYDKWFVAAIPPKNINLNFPMTDALKERVAHPSD 290 ++Y KWF IPP N+NL PM+ L++ +P+D Sbjct: 259 ERLYKKWFQQPIPPNNVNLGIPMSLLLRDSFRYPTD 294 >STM0665 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 308 Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 172/294 (58%), Gaps = 8/294 (2%) Query: 4 LLSATLITGIAISTAQA-------GPTLDNIKSKRVITIGYREASIPFSYLGADQKPVGF 56 L +A L+ G++ A A G TLD I VI +G+RE+S+PFSY QK VG+ Sbjct: 12 LTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGY 71 Query: 57 SLDLCAHVVDRLKVDLRTPDIQIKLTPVNSSNRIPLIQNGTIDIECGGTASNKQRLEQVS 116 S D +V+ +K L PD+Q+KL P+ S NRIPL+QNGT D ECG T +N +R +Q + Sbjct: 72 SQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLERQKQAA 131 Query: 117 FSVATFASQTAWLAKASSGLKTPKDLKGKTVVVTQGSDALGIAKGISQEDDLNLTIAQAK 176 FS F T L K +K DLKGK VVVT G+ + + +++E + + I AK Sbjct: 132 FSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMRIISAK 191 Query: 177 DHAESLLLLTTGRVAAWVEADILLAGMKADYSKPADLIFLKANYGTIYYYGLMFSKDDPD 236 DH +S L +GR A++ D LLAG +A KP + + + YG M K+DP+ Sbjct: 192 DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIV-GKPQSQEAYGCMLRKNDPE 250 Query: 237 FKKLVDDVLSKLMASGEFTKIYDKWFVAAIPPKNINLNFPMTDALKERVAHPSD 290 FKKL+DD +++ SGE K +DKWF IPPKN+N+NF ++D +K P+D Sbjct: 251 FKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKAPND 304