BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0152.0018.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1589 [R] COG1487 Predicted nucleic acid-binding protein, conta...   196   8e-51
SMb21651 [R] COG1487 Predicted nucleic acid-binding protein, con...    87   1e-17
mll5078 [R] COG1487 Predicted nucleic acid-binding protein, cont...    87   1e-17
AGpA21 [R] COG1487 Predicted nucleic acid-binding protein, conta...    85   4e-17
RSc0871 [R] COG1487 Predicted nucleic acid-binding protein, cont...    74   7e-14

>XF1589 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Xfa Xylella fastidiosa 9a5c
          Length = 142

 Score =  196 bits (499), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 114/136 (83%)

Query: 1   VILLDTNVVSEAMKPEPHPSVRHWLDAQAAETVFLSSVTVAELLFGIGALPRGRRKDRLA 60
           +I+LDTNVVSEAMKPEP  +VR WL+ Q + T++LSSVT++ELLFGI  LP  +RKD LA
Sbjct: 1   MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60

Query: 61  VALDGVLDLFTARILPFDTAAARRYAELAVKARAAGKGFPTPDGYIAAIAAAHGFAVASR 120
             LDG+LDLF  R+LPF+T AAR YAELAVKAR +G+GFPTPDGYIAAIAA+ G+ VASR
Sbjct: 61  RTLDGLLDLFNERVLPFNTDAARHYAELAVKARNSGRGFPTPDGYIAAIAASRGYIVASR 120

Query: 121 DTSAFNAAGLTIIDPW 136
           DTSA+ ++G+ +I+PW
Sbjct: 121 DTSAYESSGVQVINPW 136


>SMb21651 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Sme Sinorhizobium meliloti
          Length = 137

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 1   VILLDTNVVSEAMKPEPHPSVRHWLDAQAAETVFLSSVTVAELLFGIGALPRGRRKDRLA 60
           +I +DTNV+SE ++  P  +V  WL    AE + L +VT+AE+ +GI  +   +R  RL 
Sbjct: 1   MIFVDTNVISETLRKTPSEAVIAWLVRYDAE-LALPTVTIAEIAYGIQKIVPDQRAGRLQ 59

Query: 61  VALDGVLDLFTARILPFDTAAARRYAELAVKARAAGKGFPTPDGYIAAIAAAHGFAVASR 120
             LDG    F  RI      AA  Y E+   A   G     PDG IAAIA  +G  +A+R
Sbjct: 60  HGLDGWRQRFADRIYGLTEEAAMEYGEIMGTASRHGHVMSAPDGMIAAIARVNGGRLATR 119

Query: 121 DTSAFNAAGLTIIDPW 136
           + + F  AGL +I PW
Sbjct: 120 NLADFATAGLELISPW 135


>mll5078 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Mlo Mesorhizobium loti
          Length = 137

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 1   VILLDTNVVSEAMKPEPHPSVRHWLDAQAAETVFLSSVTVAELLFGIGALPRGRRKDRLA 60
           +I +DTNV+SE++K  P P+V  WL    AE + L +VT+AE+ FGI  +    R DRL 
Sbjct: 1   MIFVDTNVISESLKKTPDPAVLAWLVRNDAE-LALPTVTIAEIAFGIQKIRPDERADRLE 59

Query: 61  VALDGVLDLFTARILPFDTAAARRYAELAVKARAAGKGFPTPDGYIAAIAAAHGFAVASR 120
             L      F  RI      AA  Y  +   A   G G   PDG IAAIA  +G  +A+R
Sbjct: 60  QGLSRWRHRFADRIFGLTEEAALAYGAIMGAATRQGPGMSAPDGMIAAIARVNGGRLATR 119

Query: 121 DTSAFNAAGLTIIDPWT 137
           + + F    L +I PW 
Sbjct: 120 NLNDFGTTSLDLISPWN 136


>AGpA21 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 137

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 1   VILLDTNVVSEAMKPEPHPSVRHWLDAQAAETVFLSSVTVAELLFGIGALPRGRRKDRLA 60
           +I LDTNV+SE  K  P  +V  WL    AE   L +V VAE+ FGI  +   +R DRL 
Sbjct: 1   MIFLDTNVMSETFKKAPDSAVIAWLVRHDAELA-LPTVAVAEIAFGIQKIRPDQRADRLE 59

Query: 61  VALDGVLDLFTARILPFDTAAARRYAELAVKARAAGKGFPTPDGYIAAIAAAHGFAVASR 120
             L      F+ ++  F   AA  Y ++   A   G+G   PDG IAAI   +G  +A+R
Sbjct: 60  EGLVSWRRRFSDKMFAFTEEAALAYGDIMGDAARQGRGMSAPDGMIAAITRINGGRLATR 119

Query: 121 DTSAFNAAGLTIIDPW 136
           +   F   GL +I PW
Sbjct: 120 NLKDFETTGLELISPW 135


>RSc0871 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Rso Ralstonia solanacearum
          Length = 137

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 3   LLDTNVVSEAMKPEPHPSVRHWLDAQAAETVFLSSVTVAELLFGIGALPRGRRKDRLAVA 62
           L+DTNV+SE  +  P   V  W+  +  ++++LS +T+ E+  GI  L    R+  L   
Sbjct: 4   LIDTNVLSELRRKAPDARVAAWMQDRPRQSLYLSVLTLGEIRKGIERLEDAVRRQNLIDW 63

Query: 63  LDGVL-DLFTARILPFDTAAARRYAELAVKARAAGKGFPTPDGYIAAIAAAHGFAVASRD 121
           L+  L + F  R+L  D   A R+  L     +AG+  P  DG +AA A  H   + +R+
Sbjct: 64  LEVELPNYFLGRLLDIDAHTADRWGRL---MSSAGRPLPAIDGLLAATALQHDLTLVTRN 120

Query: 122 TSAFNAAGLTIIDPWTA 138
           T  F    + +I+PW A
Sbjct: 121 TKDFAGLDIQLINPWEA 137