BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0152.0013.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSO2528 [GEPR] COG0477 Permeases of the major facilitator superf...    59   3e-09
PA0703 [GEPR] COG0477 Permeases of the major facilitator superfa...    58   5e-09
PA4343 [GEPR] COG0477 Permeases of the major facilitator superfa...    57   9e-09
SSO2039 [GEPR] COG0477 Permeases of the major facilitator superf...    57   9e-09

>SSO2528 [GEPR] COG0477 Permeases of the major facilitator superfamily Sso
           Sulfolobus solfataricus
          Length = 426

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 1   MIWPQIAALLMTYPVFFWISESRSALALLGGLGALTMIGTIPYSAFYVSMAEGLPKNIRG 60
           MI   +  L++ YP F+ IS  + +L LL  +   + IG+   +A+  ++ E  P  +R 
Sbjct: 300 MITTAVGLLILVYPYFYLISTGQFSLILLAQI-LYSTIGSFSTAAYAAALTELFPTKVRY 358

Query: 61  GAFATTYAFAIAIFGGTAQPIVTWLIHLTGSALAPAWYMLVASAAGLCAMLLIPET 116
            A +  Y   +A+FGGT   I ++LI+ TG  LAP ++ +      L A LL  ET
Sbjct: 359 TALSFDYHVGVAVFGGTTPFIASYLIYATGYKLAPVYWGIAGMVITLIAYLLYKET 414


>PA0703 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 438

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%)

Query: 44  SAFYVSMAEGLPKNIRGGAFATTYAFAIAIFGGTAQPIVTWLIHLTGSALAPAWYMLVAS 103
           +A  V + E  P+ +R   F+  YA  +A FGGTAQ +VTWLI +TG+ L+P  Y+L+A+
Sbjct: 350 AALIVLLVESFPRALRSTGFSLVYATGVAAFGGTAQIVVTWLIGVTGNPLSPLGYLLLAN 409

Query: 104 AAGLCAMLLIPETAP 118
              L    L  ET P
Sbjct: 410 LVCLVGAWLARETWP 424


>PA4343 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 439

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 6   IAALLMTYPVFFWISESRSALALLGGLGA-LTMIGTIPYSAFYVSMAEGLPKNIRGGAFA 64
           +A +LM YP+F W++ + S   LL       T IG   +     ++AE  P  +R    A
Sbjct: 310 LAFMLMVYPLFAWVAAAPSLGRLLLMQLLLCTAIGGF-FGPAPTAVAEQFPVRVRSTGLA 368

Query: 65  TTYAFAIAIFGGTAQPIVTWLIHLTGSALAPAWYMLVASAAGLCAMLLIPETA 117
             Y  A+ +FGG A  IVTWL  + GS +APA+Y+L A+  GL A L + E A
Sbjct: 369 VAYNLAVMLFGGFAPFIVTWLTEVGGSPVAPAFYVLGAAFLGLLATLYLREGA 421


>SSO2039 [GEPR] COG0477 Permeases of the major facilitator superfamily Sso
           Sulfolobus solfataricus
          Length = 427

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 1   MIWPQIAALLMTYPVFFWISESRSALALLGGLGALTMIGTIPYSAFYVSMAEGLPKNIRG 60
           M+   +  L++ YP F  IS  + +L LL  +   ++IG++   A+  ++ E  P  +R 
Sbjct: 300 MVATAVGLLILVYPYFLLISTGQFSLILLAQI-MYSVIGSMSTGAYATALTELFPTKVRY 358

Query: 61  GAFATTYAFAIAIFGGTAQPIVTWLIHLTGSALAPAWYMLVASAAGLCAMLLIPET 116
            A +  Y   +A+FGGT   I ++LI+ TG  LAP ++ +      L A LL  ET
Sbjct: 359 TALSFDYHVGVAVFGGTTPFIASYLIYATGYKLAPVYWGIAGMILTLIAYLLYKET 414