BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0004.p (296 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01225 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 348 6e-96 AGc3973 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 345 9e-95 BMEI0513 [K] COG0583 Transcriptional regulator Bme Brucella meli... 345 1e-94 mll2551 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 344 1e-94 yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 155 1e-37 >SMc01225 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 302 Score = 348 bits (894), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 159/295 (53%), Positives = 228/295 (77%), Gaps = 2/295 (0%) Query: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 +DWDKL++FHAAAEAGSFTHA ++L LSQSA+SRQVS+LEQ++ + LFHRHARGLILTEQ Sbjct: 7 LDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILTEQ 66 Query: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTPPALGINWLIPRLDEFTALYPDI 120 G++L+RTAHDV M+L++ +A+L+++ ++PSG L+ITT LG WL ++ EF +LYP+I Sbjct: 67 GEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYPEI 126 Query: 121 RISLIVTDEDLDLSMREADVAIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKRFGTPRTL 180 ++ LI+ +E+LD++MR AD AIR R+P Q DLIQRKLF++ H Y +P YI ++G P++L Sbjct: 127 QVQLILDNEELDVNMRHADCAIRLRQPQQSDLIQRKLFTVHMHVYAAPSYINKYGEPQSL 186 Query: 181 DDLDSHRIIMLGDSQVPAHLQNRSWLIDAGRNGSGPREPYFKVNNILGLVRACQQGLGIA 240 DDLD+HRII G+ P +L + +WL AGR+ PR + ++N+ + RAC G+GIA Sbjct: 187 DDLDNHRIITFGEP-APNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIGIA 245 Query: 241 ALPDYLVEQN-NLVQLFGESDSIALDTYFVYPEELKTVARVQVFRDFVVSKAQRW 294 LPDY+V ++ L+QL +D + DTYF YP+ELK A+++VFRD++V+KA+ W Sbjct: 246 MLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVAKARNW 300 >AGc3973 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 300 Score = 345 bits (884), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 159/295 (53%), Positives = 223/295 (75%), Gaps = 2/295 (0%) Query: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 +DWDKL++FHAAAEAGSFTHA ++L LSQSA+SRQVSALEQ++ V LFHRHARGLILTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILTEQ 64 Query: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTPPALGINWLIPRLDEFTALYPDI 120 G+LL+RTAHDV ++L+ + +LT++ E+PSG L++TT LG WL ++ EF LYP++ Sbjct: 65 GELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYPEM 124 Query: 121 RISLIVTDEDLDLSMREADVAIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKRFGTPRTL 180 I LI+ +E+LD++MR AD AIR R+P Q DLIQRKLF++ H Y +P YI R G P+++ Sbjct: 125 SIQLILDNEELDVNMRHADCAIRLRQPQQSDLIQRKLFTVHMHVYAAPSYINRHGEPQSV 184 Query: 181 DDLDSHRIIMLGDSQVPAHLQNRSWLIDAGRNGSGPREPYFKVNNILGLVRACQQGLGIA 240 +DLD+HRII G+ P +L + +WL +AGR+ R P+ ++N+ + RAC G+GIA Sbjct: 185 EDLDNHRIISFGEP-APNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIGIA 243 Query: 241 ALPDYLVEQN-NLVQLFGESDSIALDTYFVYPEELKTVARVQVFRDFVVSKAQRW 294 LPDY+V ++ L+QL +D + DTYF YP+E+K A+++ FRDF+V+KA+ W Sbjct: 244 CLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFIVAKARNW 298 >BMEI0513 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 301 Score = 345 bits (884), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 163/296 (55%), Positives = 219/296 (73%), Gaps = 3/296 (1%) Query: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 +DWDKL++FHAAAEAGSFTHA + L LSQSA+SRQVSALEQ++ V LFHRHARGLILTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTPPALGINWLIPRLDEFTALYPDI 120 G+ L+RTAHDV M+L+ R+KL +SRE+PSG L++TT LG WLI R+ EF LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 121 RISLIVTDEDLDLSMREADVAIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKRFGTPRTL 180 ++ LI+ +E+LDL+MR AD A+R R+P QPDLIQR+LF + H Y S Y+ ++G ++ Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQPQQPDLIQRRLFIVHMHVYASAGYVSKYGKLNSI 184 Query: 181 DDLDSHRIIMLGDSQVPAHLQNRSWLIDAGRNGSGPREPYFKVNNILGLVRACQQGLGIA 240 D++D HRI+ G+ P++L +WL AGR R P +VNN+L + RA Q+G+GIA Sbjct: 185 DEIDQHRIVTFGEP-APSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 241 ALPDYLVE-QNNLVQLFGESDSI-ALDTYFVYPEELKTVARVQVFRDFVVSKAQRW 294 LPDY+ + ++ LVQL E + I + DT+F YPE LK A++ FRDF+ SKA+ W Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNW 299 >mll2551 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 298 Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 159/295 (53%), Positives = 221/295 (74%), Gaps = 2/295 (0%) Query: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 +DWDKL+VFHAAAEAGSFTHA E L LSQSA+SRQVSALE ++ V LF+RHARGL+LTEQ Sbjct: 3 LDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLTEQ 62 Query: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTPPALGINWLIPRLDEFTALYPDI 120 G++LFRTAHDV M+L+ +++LT++++RPSG L++TT LG WL R+ EF LYP+I Sbjct: 63 GEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYPEI 122 Query: 121 RISLIVTDEDLDLSMREADVAIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKRFGTPRTL 180 + LI+ +E+LDL+MR+AD AIR R+P QPDLIQR+LF++ FH Y +P Y+ + G P ++ Sbjct: 123 SLQLILANEELDLTMRQADCAIRLRQPQQPDLIQRRLFTVHFHLYAAPSYVAKHGKPASV 182 Query: 181 DDLDSHRIIMLGDSQVPAHLQNRSWLIDAGRNGSGPREPYFKVNNILGLVRACQQGLGIA 240 +L +HRI+ G VP+HL +WL G G R P ++N+IL + RA Q G GIA Sbjct: 183 SELRNHRIVTFG-LPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAGIA 241 Query: 241 ALPDYLVEQNN-LVQLFGESDSIALDTYFVYPEELKTVARVQVFRDFVVSKAQRW 294 LPDY++ +++ LVQL E++ + DTYF YP+ +K A++ VFRDF+++KA+ W Sbjct: 242 MLPDYVINKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSW 296 >yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 304 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 161/299 (53%), Gaps = 14/299 (4%) Query: 4 DKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQGDL 63 ++L +F + E+GSF+ A EQLG + SAVSR V LE +L VSL +R R L LTE+G+ Sbjct: 6 EELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGER 65 Query: 64 LFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTPPALGINWLIPRLDEFTALYPDIRIS 123 FR + ++ AA +++ ++R P G L+I + +++L+P + F YP++ +S Sbjct: 66 YFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLS 125 Query: 124 LIVTDEDLDLSMREADVAIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKRFGTPRTLDDL 183 L+ ++ ++L R+ DVAIR T L R LF+ SP+YI R+G P T+DDL Sbjct: 126 LVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPETIDDL 185 Query: 184 DSHRIIMLGDSQVPAHLQNRSWLIDAGRNGSGPREPYFKVNNILG--LVRACQQGLGIAA 241 H I LG ++ PA L +W I R+ E + +++ G L + C G GIA Sbjct: 186 KQH--ICLGFTE-PASLN--TWPI--ARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIAC 238 Query: 242 LPDYLVEQ----NNLVQLFGESD-SIALDTYFVYPEELKTVARVQVFRDFVVSKAQRWP 295 L DY++++ LV+L + + + VY + R++ F DF+ + P Sbjct: 239 LSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAP 297