BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0002.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    87   7e-18
Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    75   3e-14
TM0909 [NU] COG1377 Flagellar biosynthesis pathway, component Fl...    71   6e-13
BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    67   1e-11
ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component Flh...    65   5e-11

>CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Ccr Caulobacter vibrioides
          Length = 87

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 59/78 (75%)

Query: 4  ANNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGDE 63
          +  ++AVAL Y+   AP+VVA G+G IG +IIE AK + +PIEE+ VLA ALS +E+ +E
Sbjct: 9  SKPRIAVALLYEEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQALSTIEIDEE 68

Query: 64 IPAELYKAVAEVLVFVLR 81
          IP  LY+AVAEVL F+L+
Sbjct: 69 IPEALYRAVAEVLSFLLK 86


>Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Cje Campylobacter jejuni
          Length = 93

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 9  AVALHY--DHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGDEIPA 66
          AVAL Y  +   AP+V+A GKG   A+II +AK + +PI+E+E L   LS ++LGDEIP 
Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSKLDLGDEIPP 70

Query: 67 ELYKAVAEVLVFVLRMSGRA 86
           +YKAVAEV  F+ +M+ + 
Sbjct: 71 NMYKAVAEVFAFIYQMANKT 90


>TM0909 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Tma
           Thermotoga maritima
          Length = 374

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 3/82 (3%)

Query: 6   NQLAVALHYD--HAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGAL-SNVELGD 62
              AVAL YD     AP VVAKG   +  +IIE+AK ND+P+  N  LA AL    E+G+
Sbjct: 290 THFAVALKYDPDTMNAPVVVAKGVDHLAFKIIEIAKENDVPVLRNPSLARALYYKTEIGE 349

Query: 63  EIPAELYKAVAEVLVFVLRMSG 84
           EIP E Y+ VAEVLV+V    G
Sbjct: 350 EIPVEFYRIVAEVLVYVYAKKG 371


>BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Bsu Bacillus subtilis
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 9  AVALHYDHAG--APRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGDEIPA 66
          AVALHYD     APRV+A GKG +   II+ AK   +PI+E+  L   + ++ + D+IP 
Sbjct: 10 AVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHLTVDDQIPE 69

Query: 67 ELYKAVAEVLVFVLRMS 83
           LY+ VAE+  F+ ++ 
Sbjct: 70 ALYETVAEIFSFIYKLD 86


>ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB EcZ
           Escherichia coli O157:H7 EDL933
          Length = 382

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 6   NQLAVALHYDH--AGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGAL-SNVELGD 62
              +VAL YD     AP+VVAKG G +  RI E+   N++P  E   LA AL  +VE+G 
Sbjct: 270 THYSVALQYDENKMSAPKVVAKGAGLVALRIREIGXENNVPTLEAPPLARALYRHVEIGQ 329

Query: 63  EIPAELYKAVAEVLVFVLRM 82
           +IP +LY AVAEVL +V ++
Sbjct: 330 QIPGQLYAAVAEVLAWVWQL 349