BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0042.p         (202 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv2887 [K] COG1846 Transcriptional regulators Mtu Mycobacterium ...    84   2e-16
MT2955 [K] COG1846 Transcriptional regulators MtC Mycobacterium ...    84   2e-16
RSp0224 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    72   1e-12

>Rv2887 [K] COG1846 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 139

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 75/131 (57%)

Query: 68  LAYLLRQAHAASRLSMERALAELGVTSPQFVVLTMLKAYPGLSGADLARVALLTPQTVSV 127
           L YLL +  A  R  +  AL+ LG+T P+FV L ML   PGLS A+LAR A +TPQ ++ 
Sbjct: 9   LGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQSPGLSSAELARHASVTPQAMNT 68

Query: 128 IIRNLERDGAIRKTPHPVHGRVLQWTLTGHGTALLEKCRHIAQAQERRLAAGLDPRSEQV 187
           ++R LE  GA+ +      GR L  TLT  G AL ++   + +A + R+ A L    ++ 
Sbjct: 69  VLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRAEAVVRAADARVLARLTAPQQRE 128

Query: 188 VRRWLSKIATD 198
            +R L K+ +D
Sbjct: 129 FKRMLEKLGSD 139


>MT2955 [K] COG1846 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 139

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 75/131 (57%)

Query: 68  LAYLLRQAHAASRLSMERALAELGVTSPQFVVLTMLKAYPGLSGADLARVALLTPQTVSV 127
           L YLL +  A  R  +  AL+ LG+T P+FV L ML   PGLS A+LAR A +TPQ ++ 
Sbjct: 9   LGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQSPGLSSAELARHASVTPQAMNT 68

Query: 128 IIRNLERDGAIRKTPHPVHGRVLQWTLTGHGTALLEKCRHIAQAQERRLAAGLDPRSEQV 187
           ++R LE  GA+ +      GR L  TLT  G AL ++   + +A + R+ A L    ++ 
Sbjct: 69  VLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRAEAVVRAADARVLARLTAPQQRE 128

Query: 188 VRRWLSKIATD 198
            +R L K+ +D
Sbjct: 129 FKRMLEKLGSD 139


>RSp0224 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 154

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 68  LAYLL-RQAHAASRLSMERALAELGVTSPQFVVLTMLKAYPGLSGADLARVALLTPQTVS 126
           +AYL+ R  H  SR  M  +L  LG+T PQ+  L+ L     LS A LA  +L +PQ+ +
Sbjct: 18  IAYLIGRLDHVLSR-RMRDSLLPLGLTVPQYTTLSFLSTQGQLSNAQLAERSLTSPQSAN 76

Query: 127 VIIRNLERDGAIRKTPHPVHGRVLQWTLTGHGTALLEKCRHIAQAQERRLAAGLDP 182
            +++ +E  G I + P P HGR++   LT  G ALL++C       E+ + A + P
Sbjct: 77  EMVKMMEGRGWIAREPDPSHGRIINIRLTAEGQALLDRCDIAVAEVEKSMLADMAP 132