BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0146.0039.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2915 [L] COG0608 Single-stranded DNA-specific exonuclease Atu... 202 4e-52 mll0927 [L] COG0608 Single-stranded DNA-specific exonuclease Mlo... 196 4e-50 SMc00292 [L] COG0608 Single-stranded DNA-specific exonuclease Sm... 189 4e-48 BMEI0728 [L] COG0608 Single-stranded DNA-specific exonuclease Bm... 178 7e-45 RP528 [L] COG0608 Single-stranded DNA-specific exonuclease Rpr R... 110 2e-24 >AGc2915 [L] COG0608 Single-stranded DNA-specific exonuclease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 602 Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 103/209 (49%), Positives = 140/209 (66%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 +VGL+A+RLK++F RPAFAIA +P G GTGSGRSI G D+G+ VR AV GLL+KGGGHA Sbjct: 391 IVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMGRMVRAAVETGLLVKGGGHA 450 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAG+T+ + L + R F E A A V + L IDGA+ A T + L +AGP Sbjct: 451 MAAGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKIDGAIGASGATLQLVDQLEQAGP 510 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 +G+ + +P+ A+P+H+L VG AH+++ ++ DGS ++GIAFR+ LG L R Sbjct: 511 YGSGHSQPIFAVPAHRLRDVRLVGTAHVKITLEAMDGSRLDGIAFRAAEAPLGQMLLNAR 570 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVA 209 G+ +HVAG++ D WQG RVQ RVLD A Sbjct: 571 GRNIHVAGTVGADLWQGQRRVQLRVLDAA 599 >mll0927 [L] COG0608 Single-stranded DNA-specific exonuclease Mlo Mesorhizobium loti Length = 592 Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 104/209 (49%), Positives = 133/209 (63%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 +VGL+A+RLK+ RPAFAIA GIGTGSGRS+ G DLG+ VR+A GL++KGGGH Sbjct: 382 IVGLLASRLKDHARRPAFAIAFNAVGIGTGSGRSVSGFDLGRLVREAADAGLIVKGGGHG 441 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAG+T+ + +L E RAF E A DV + E L IDGA+ A T L +AGP Sbjct: 442 MAAGITVERARLGELRAFFEERAAADVFRLQDEESLAIDGALAAEGATLSLLDALEKAGP 501 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FGA + PV LP H+L A VG H+R +S G + IAFR+V LG L +NR Sbjct: 502 FGAGHVAPVFVLPRHRLADARPVGTNHIRCELQSDAGGRIPAIAFRAVDTVLGEFLFKNR 561 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVA 209 G+ +HVAGSL+ + W G VQFR++D A Sbjct: 562 GKSVHVAGSLSGNYWNGNRTVQFRIVDAA 590 >SMc00292 [L] COG0608 Single-stranded DNA-specific exonuclease Sme Sinorhizobium meliloti Length = 600 Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 103/209 (49%), Positives = 140/209 (66%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 +VGL+AAR+KEKF RPAFAIA +P G GTGSGRSI G D+G+ VR AV +GLL+KGGGHA Sbjct: 389 IVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSINGFDMGRLVRAAVDNGLLVKGGGHA 448 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAG+T+ + KL + R F E + + L +DGA+ A T + L++AGP Sbjct: 449 MAAGLTVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGALAAAGATLDLVDLLDQAGP 508 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 +G+ +P+P+ A P H+L + +VG H+++ + DGS + GIAFR+ LG L NR Sbjct: 509 YGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGSRMEGIAFRAAETPLGDFLLGNR 568 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVA 209 G +HVAGS++ D WQGT +VQ RV D A Sbjct: 569 GATVHVAGSVSADLWQGTRKVQLRVTDAA 597 >BMEI0728 [L] COG0608 Single-stranded DNA-specific exonuclease Bme Brucella melitensis Length = 594 Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 104/211 (49%), Positives = 139/211 (65%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 +VGL+A+RLKEK RPAFAIA G+G+GSGRSI G+DLGK VR AV GLL+KGGGHA Sbjct: 383 IVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLDLGKLVRGAVEKGLLVKGGGHA 442 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAG+T+ + L RA++E AD V+ R L IDGA+ A T L +AGP Sbjct: 443 MAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSIDGALAASGATVALYEALQKAGP 502 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 +G+A+P+P++ALP H L VG+ H+R+ + DG VN IAFR+ LG L N Sbjct: 503 YGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKRVNAIAFRAAEGDLGRFLFNNI 562 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVP 211 G +HVAG+L+++ W G+ Q ++LD A+P Sbjct: 563 GCSVHVAGNLSLNHWNGSVSPQIQILDAALP 593 >RP528 [L] COG0608 Single-stranded DNA-specific exonuclease Rpr Rickettsia prowazekii Length = 586 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 11/215 (5%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 V+G+VA +LKEKF +P +AL GIG S RSI G+D + A L++ GGGHA Sbjct: 373 VIGIVAGKLKEKFDKPVVVVALN-NGIGKASCRSILGIDFSAEIINAKSKDLIISGGGHA 431 Query: 61 MAAGVTLRKEKLAEFRAFMESALA---DDVANSRHENELFIDGAVTARAVTPEFAATLNR 117 MAAG T KL E + F+ A + + +A+ +H E ID +T V L Sbjct: 432 MAAGFTATASKLQELQDFLNDAFSISINKLASYKHA-EYDID--LTVNGVNFRLMEELKT 488 Query: 118 AGPFGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGD----GSIVNGIAFRSVGQKLG 173 PFG N EP+ ++ AD VG H++ ++ I F +VG Sbjct: 489 LEPFGPGNYEPIFKFDDLFILKADIVGSKHIKCMLAPDKQYFGNKALSAIVFDAVGTPFE 548 Query: 174 SALTQNRGQQLHVAGSLAVDRWQGTERVQFRVLDV 208 L +R + + G+L ++ W+ +Q + D+ Sbjct: 549 DILLSSRARHISAIGTLKMNNWKYNYTIQLIIKDI 583