BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0007.p         (208 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0306 [R] COG5516 Conserved protein containing a Zn-ribbon-lik...    92   1e-18

>RSp0306 [R] COG5516 Conserved protein containing a Zn-ribbon-like motif,
           possibly RNA-binding Rso Ralstonia solanacearum
          Length = 199

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 102/205 (49%), Gaps = 20/205 (9%)

Query: 3   SHPPAMFIADSLGLDFINSIATPVDTPVD-WIADGDGLLRWLAQAQLVPPVVLDELKARA 61
           ++P    IAD   LD +N++A     P D W AD D +  WL QA  V     + L  R 
Sbjct: 12  ANPMPASIADHPVLDMLNTVANVNGQPHDFWQADED-VSAWLMQAGWVD----ETLAGRY 66

Query: 62  TPGALDNAAGQARDLREWFRGFVR-KHMGRPLTPRALKELEPLNRLLESDQAFSKIVAHR 120
            PGAL      AR LRE  R  V+ +  G+   P AL      N  L    +   +V   
Sbjct: 67  PPGAL---LAVARHLREVIRTLVQTRKAGKRANPDAL------NVFLRQAPSHPALVWQ- 116

Query: 121 QKDGDDGFALERTRRWRSAETLLLPIGEAMARVVCEESFSDIKACEGPACTLMFADHTRA 180
              GD    LER R   S E  L P+ E+ A+++ +  F  I+ CE P CTL F D TR+
Sbjct: 117 ---GDAPPRLERRRPADSVEQCLAPLAESAAQLLADGDFQRIRVCEHPGCTLWFYDRTRS 173

Query: 181 RARRWCSMAICGNRAKQAAHRSRMK 205
           R RRWCSMA CGNR K AA+R R +
Sbjct: 174 RRRRWCSMAACGNRHKVAAYRLRQQ 198