BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0144.0045.p (477 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0113_1 [T] COG2202 FOG Sme Sinorhizobium meliloti 403 e-112 AGpA543_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C... 231 4e-60 mll9655_1 [T] COG2202 FOG Mlo Mesorhizobium loti 201 4e-51 mll9598 [T] COG3920 Signal transduction histidine kinase Mlo Mes... 195 2e-49 CC0836_2 Non COG 176 1e-43 >SMa0113_1 [T] COG2202 FOG Sme Sinorhizobium meliloti Length = 652 Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/277 (67%), Positives = 228/277 (82%) Query: 2 EGKFVNTRCFTIDVTKLHASEEARQASETRLAATYEAASVGISEIDENGRFLRVNDSLCR 61 +GKFVNTRCFT D+T LH +E A + +E RLAATY+AA++GI+E D +GR LRVND+ C Sbjct: 259 DGKFVNTRCFTTDITSLHETENAWRETEERLAATYQAATIGIAESDADGRLLRVNDAFCT 318 Query: 62 ITGRSRDELLGMTFFDYTDPDDRAEDAELYARQVHGDIANYTIRKRALRPDGSVRHLDIF 121 + GRSR++LL MTF DYT DDR E+A YARQV G+ Y IRKRA++ DG+V +LD++ Sbjct: 319 MLGRSREQLLNMTFLDYTHEDDRDEEARCYARQVSGETDTYAIRKRAVKADGTVIYLDVY 378 Query: 122 SSSVRDTEGRFLYGVRVAQDVTATKQLEDRLREGEQRMRDLLEALPAAIYTTDANGRINF 181 SS+VRD GRF YGVRV DVT K+++DR RE EQ MRDLLEALPAA+YTTDA GRI F Sbjct: 379 SSTVRDRTGRFRYGVRVLLDVTEAKRMDDRRRESEQHMRDLLEALPAAVYTTDAEGRITF 438 Query: 182 YNRAAVEMAGRTPQPGDEWCVTWKLYWPDGSPLPHSECPMAVALRENRPVRGAEAVAERP 241 +N+AAVEMAGRTPQ GD+WCVTW+LY PDG+ LPH +CPMAV L+E+RPVRG +AVAERP Sbjct: 439 FNKAAVEMAGRTPQIGDKWCVTWRLYRPDGTYLPHDQCPMAVTLKEDRPVRGEQAVAERP 498 Query: 242 DGGRVPFIPYPTPLRDAAGNLVGAINMLVDISERKRA 278 DG RVPFIPYPTPL D AG LVGA+NMLVDIS+R++A Sbjct: 499 DGTRVPFIPYPTPLHDVAGKLVGAVNMLVDISDREKA 535 Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 104/213 (48%), Gaps = 22/213 (10%) Query: 163 LEALPAAIYTTDANGRINFYNRAAVEMAGRTPQ---PGDEWCVTWKLYWPDGSPLPHSEC 219 L+A+P A+Y D G + YN A E+ GR P P + +C + +L+ DGSP+ H EC Sbjct: 37 LDAIPGAVYVCDHEGWLVGYNAEAAELWGRQPSLSAPRERFCGSQRLFLSDGSPMDHQEC 96 Query: 220 PMAVALRENRPVRGAEAVAERPDGGRVPFIPYPTPLRDAAGNLVGAINMLVDISERKRAE 279 PMA A++ R AE + ERPDG R+ + PLRD G + GAIN DIS++KR E Sbjct: 97 PMAEAIKTGVSTRNAEVIIERPDGSRIFALVNIRPLRDHRGVIQGAINCFQDISQQKRIE 156 Query: 280 NAQKVLIDELNHRVKNT---LATVQSLASQTARHAADLEEF---LPTFTGRLLAFARAHD 333 +L +N+ L V + + A+LE + GR +A A Sbjct: 157 AEVNCKSKDLEDFFENSAIGLHIVSAAGIILRANKAELELLGYPADEYVGRHIAEFHA-- 214 Query: 334 LLTQRNWQDAPFEKLVGDIVAPVSGGRVMTEGP 366 DAP ++GDI+ +S G + P Sbjct: 215 --------DAP---VIGDILDRLSCGEKLDRYP 236 Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 10/275 (3%) Query: 10 CFTIDVTKLHASEEARQASETRLAATYEAASVGISEIDENGRFLRVNDSLCRITGRSRDE 69 CF D+++ E L +E +++G+ + G LR N + + G DE Sbjct: 145 CFQ-DISQQKRIEAEVNCKSKDLEDFFENSAIGLHIVSAAGIILRANKAELELLGYPADE 203 Query: 70 LLGMTFFDYTDPDDRAEDAELYARQVHGD-IANYTIRKRALRPDGSVRHLDIFSSSVRDT 128 +G ++ D ++ R G+ + Y R RA DGS++H+ I S+S R Sbjct: 204 YVGRHIAEFHA--DAPVIGDILDRLSCGEKLDRYPARLRAR--DGSIKHVLITSNS-RFE 258 Query: 129 EGRFLYGVRVAQDVTATKQLEDRLREGEQRMRDLLEALPAAIYTTDANGRINFYNRAAVE 188 +G+F+ D+T+ + E+ RE E+R+ +A I +DA+GR+ N A Sbjct: 259 DGKFVNTRCFTTDITSLHETENAWRETEERLAATYQAATIGIAESDADGRLLRVNDAFCT 318 Query: 189 MAGRTPQPGDEWCVTWKLYWPDGSPLPHSECPMAVALRENRPVRGAEAVAERPDGGRVPF 248 M GR+ + +T+ Y + + C A + A + DG + Sbjct: 319 MLGRSRE--QLLNMTFLDYTHEDDRDEEARC-YARQVSGETDTYAIRKRAVKADGTVIYL 375 Query: 249 IPYPTPLRDAAGNLVGAINMLVDISERKRAENAQK 283 Y + +RD G + +L+D++E KR ++ ++ Sbjct: 376 DVYSSTVRDRTGRFRYGVRVLLDVTEAKRMDDRRR 410 >AGpA543_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 271 Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/250 (49%), Positives = 165/250 (66%), Gaps = 7/250 (2%) Query: 36 YEAASVGISEIDENGRFLRVNDSLCRITGRSRDELLGMTFFDYTDPDDRAEDAELYARQV 95 +E +V + + E+G LR N + + G + +E +G + D E+ AR Sbjct: 27 FENGAVALHLVGEDGTILRANRAELDLLGFTAEEYIGRPISQFHADSDTIR--EILARLS 84 Query: 96 HGDIAN-YTIRKRALRPDGSVRHLDIFSSSVRDTEGRFLYGVRVAQDVTATKQLEDRLRE 154 G+ N + R RA DGS+R+++I +SSV+ +G+FL DVT T QL +L Sbjct: 85 GGEKLNRFPARLRA--KDGSIRYVEI-TSSVQFRDGKFLNTRCFTIDVTDTVQLRRQLAR 141 Query: 155 GEQRMRDLLEALPAAIYTTDANGRINFYNRAAVEMAGRTPQPG-DEWCVTWKLYWPDGSP 213 EQ MR +LEALPAA+YTTDA G+I +YNRAA E++GR P G DEWCVT++L+ PDG P Sbjct: 142 KEQEMRQILEALPAAVYTTDAQGKITYYNRAATELSGREPVVGQDEWCVTYRLFTPDGQP 201 Query: 214 LPHSECPMAVALRENRPVRGAEAVAERPDGGRVPFIPYPTPLRDAAGNLVGAINMLVDIS 273 LPH +CPMA+ALRE R VRG EA+A+RPDG VPF+P+PTP+ D G L+GAINMLVDIS Sbjct: 202 LPHDQCPMAIALREKRAVRGVEAIAQRPDGTMVPFLPFPTPMFDEDGELIGAINMLVDIS 261 Query: 274 ERKRAENAQK 283 +RK AE QK Sbjct: 262 DRKTAETNQK 271 >mll9655_1 [T] COG2202 FOG Mlo Mesorhizobium loti Length = 396 Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 109/253 (43%), Positives = 157/253 (62%), Gaps = 9/253 (3%) Query: 36 YEAASVGISEIDENGRFLRVNDSLCRITGRSRDELLGMTFFDYTDPDDRAEDAELYARQV 95 +E ++ + + +G L N + + G ++ +G ++ DR + +R Sbjct: 38 FENGAIALHLVSADGLILHANKAELDLLGYPAEDYVGRHITEFYP--DRDVITNILSRLS 95 Query: 96 HGD-IANYTIRKRALRPDGSVRHLDIFSSS-VRDTEGRFLYGVRVAQDVTATKQLEDRLR 153 G+ IA Y R RA DGS++H+++ SS RD G+ + DVT ++ LR Sbjct: 96 RGEQIARYPARLRAR--DGSIKHVELTSSGHFRD--GKLVNTRCFTVDVTDLERTRTELR 151 Query: 154 EGEQRMRDLLEALPAAIYTTDANGRINFYNRAAVEMAGRTPQPG-DEWCVTWKLYWPDGS 212 + + +L+ LP AIYTTD NG I +YNRAA ++AGR PQ G D+WCVT+KL+ DG Sbjct: 152 QQDNAYHQILDGLPVAIYTTDQNGIITYYNRAAADLAGREPQVGKDKWCVTFKLFTTDGK 211 Query: 213 PLPHSECPMAVALRENRPVRGAEAVAERPDGGRVPFIPYPTPLRDAAGNLVGAINMLVDI 272 LPH ECPMAVAL+ENRPVR +A+A+RPDG PF+PYPTPLRD G LVGA+NML+D+ Sbjct: 212 ELPHDECPMAVALKENRPVRNQQAIAQRPDGSFFPFMPYPTPLRDEQGGLVGAVNMLLDL 271 Query: 273 SERKRAENAQKVL 285 ++R+RAE ++ L Sbjct: 272 TDRQRAEETRQHL 284 Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 117/277 (42%), Gaps = 14/277 (5%) Query: 2 EGKFVNTRCFTIDVTKLHASEEARQASETRLAATYEAASVGISEIDENGRFLRVNDSLCR 61 +GK VNTRCFT+DVT L + + + + V I D+NG N + Sbjct: 127 DGKLVNTRCFTVDVTDLERTRTELRQQDNAYHQILDGLPVAIYTTDQNGIITYYNRAAAD 186 Query: 62 ITGR----SRDELLGMTFFDYTDPDDRAEDAELYARQVHGDIANYTIRKRALRPDGSVRH 117 + GR +D+ TD + D A + + + A RPDGS Sbjct: 187 LAGREPQVGKDKWCVTFKLFTTDGKELPHDECPMAVALKENRPVRNQQAIAQRPDGSFFP 246 Query: 118 LDIFSSSVRDTEGRFLYGVRVAQDVTATKQLEDRLREGEQRMRDLLEALPAAIYTTDANG 177 + + +RD +G + V + D+T ++ E E Q + ++E+ AI + D N Sbjct: 247 FMPYPTPLRDEQGGLVGAVNMLLDLTDRQRAE----ETRQHLSAIVESSFDAIVSKDLNT 302 Query: 178 RINFYNRAAVEMAGRTPQPGDEWCVTWKLYWPDGSPLPHSECPMAVA-LRENRPVRGAEA 236 I +NR A ++ G T VT + PD E P + LR V E Sbjct: 303 IIKSWNRGAEKLFGYTASEAIGKSVT--MLIPDDH---QDEEPRILERLRRGERVDTYET 357 Query: 237 VAERPDGGRVPFIPYPTPLRDAAGNLVGAINMLVDIS 273 + R DG VP +P+R+A G +VGA + DI+ Sbjct: 358 IRRRKDGSLVPVSLTISPVRNATGQIVGASKIARDIT 394 >mll9598 [T] COG3920 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 690 Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 181/337 (53%), Gaps = 11/337 (3%) Query: 138 VAQDVTATKQLEDRLREGEQRMRDL---LEALPAAI-YTTDANGRINFYNRAAVEMAGRT 193 V + T + L D R QR +L L+ +PAA+ +T D + NR A E+ G Sbjct: 337 VREFATIAQALVDAERAIAQRRNELETVLDTVPAAVWFTYDPKALLVIRNRFATELMGLP 396 Query: 194 PQPGDEWCV----TWKLYWPDGSPLPHSECPMAVALRENRPVRGAEAVAERPDGGRVPFI 249 + + V + DG + + P++ A+R E P G + Sbjct: 397 TKVRQSFGVPDPVINTVAVKDGHTVSREDRPLSRAMR-GELTDNEEFSYTLPSGRERFLL 455 Query: 250 PYPTPLRDAAGNLVGAINMLVDISERKRAENAQKVLIDELNHRVKNTLATVQSLASQTAR 309 P+R A G+++GA+ + +DI++RKR E +K+L+ ELNHRVKNTLA VQ++ASQT R Sbjct: 456 SSARPIRGATGHIIGAVQISLDITDRKRGEEQRKLLVKELNHRVKNTLAVVQAIASQTIR 515 Query: 310 HAADLEEFLPTFTGRLLAFARAHDLLTQRNWQDAPFEKLVGDIVAPVSG-GRVMTEGPHV 368 +A L E T T RL++ ++AHD+LTQ+NW A L+ + + P + R G V Sbjct: 516 NATSLPEAGRTLTSRLVSLSKAHDILTQKNWSGANLHDLIIESIKPHAAIERFQITGEKV 575 Query: 369 DLDARTALSVTMVFNELLTNAVKYGALSLPDGSVSLTWR-VGRGNQSTLECEWRERGGPP 427 L ALS + +EL TNA+KYGALS G V+++W V RG ++ EWRE GGP Sbjct: 576 WLPPNLALSFALALHELTTNAIKYGALSNAKGRVTISWNLVNRGTEARFNLEWRETGGPA 635 Query: 428 VTPPKRRGFGTRLMERCIEHDLAGEFDLVFEPEGARC 464 V +RRGFGT+L+ER + AG + F+ G C Sbjct: 636 VGSIERRGFGTQLLERVFAPNSAGRVLMNFKRRGLSC 672 >CC0836_2 Non COG Length = 204 Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 134/199 (67%), Gaps = 4/199 (2%) Query: 271 DISERKRAENAQKVLIDELNHRVKNTLATVQSLASQTARHAADLEEFLPTFTGRLLAFAR 330 +I+ERKRAE ++L++ELNHRVKN+LAT+Q++A+Q+ D++E F+ R++A A Sbjct: 1 NITERKRAELHLRLLVNELNHRVKNSLATIQAIAAQSFNGQRDMDEAKEAFSNRIVALAE 60 Query: 331 AHDLLTQRNWQDAPFEKLVGDIVAPVSGG--RVMTEGPHVDLDARTALSVTMVFNELLTN 388 AHDLLT+ NW+ A V VA + GG R G + L +TALS++M +EL TN Sbjct: 61 AHDLLTRENWEGAEMHD-VAARVAALHGGDARFELSGVAIRLSPKTALSLSMALHELATN 119 Query: 389 AVKYGALSLPDGSVSLTWRVG-RGNQSTLECEWRERGGPPVTPPKRRGFGTRLMERCIEH 447 AVKYGALS+P+G V + W + L+ W ERGGPPVTPP+RRGFG+RL+ER + Sbjct: 120 AVKYGALSVPEGVVRIVWDMAPEPGAPRLDLTWTERGGPPVTPPQRRGFGSRLIERGLAA 179 Query: 448 DLAGEFDLVFEPEGARCRM 466 +LAG + F+PEG CR+ Sbjct: 180 ELAGAAVIDFQPEGVVCRI 198