BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0012.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

msl4017 [J] COG0211 Ribosomal protein L27 Mlo Mesorhizobium loti      143   1e-34
AGc5052 [J] COG0211 Ribosomal protein L27 Atu Agrobacterium tume...   142   3e-34
SMc03772 [J] COG0211 Ribosomal protein L27 Sme Sinorhizobium mel...   140   7e-34
CC0318 [J] COG0211 Ribosomal protein L27 Ccr Caulobacter vibrioides   117   5e-27
VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae          110   8e-25

>msl4017 [J] COG0211 Ribosomal protein L27 Mlo Mesorhizobium loti
          Length = 89

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 75/89 (84%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS  KRLG+K FGGE VIPGNII RQRGTTWHPG+NVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSHSKRLGVKKFGGEAVIPGNIIIRQRGTTWHPGVNVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          A   G V F  KANGRT+VSV P+ +AAE
Sbjct: 61 ALESGAVTFNKKANGRTYVSVNPITKAAE 89


>AGc5052 [J] COG0211 Ribosomal protein L27 Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 89

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 74/89 (83%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS+ KRLG+K FGGE VIPGNII RQRGT WHPG NVG+G DHT+F
Sbjct: 1  MAHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          A   G+V FR KANGR FVSV P AEAAE
Sbjct: 61 ALTAGNVNFRTKANGRVFVSVAPKAEAAE 89


>SMc03772 [J] COG0211 Ribosomal protein L27 Sme Sinorhizobium meliloti
          Length = 89

 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 75/89 (84%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS+ KRLG+K FGGE VIPGNII RQRGT WH G NVG+G DHT+F
Sbjct: 1  MAHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIIVRQRGTKWHAGANVGLGKDHTIF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          A   G+V+FR KANGR +VSV+P AEAAE
Sbjct: 61 ALTTGNVDFRKKANGRVYVSVMPKAEAAE 89


>CC0318 [J] COG0211 Ribosomal protein L27 Ccr Caulobacter vibrioides
          Length = 89

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 70/89 (78%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKK+GGSS NGRDS+ KRLG+K FGGE+V+ GNI+ RQRGT ++PG  VG+G DHTLF
Sbjct: 1  MAHKKSGGSSSNGRDSESKRLGVKKFGGEKVLAGNILVRQRGTKFYPGSGVGIGKDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          A V+G V F  K + RT+V+V P A+ AE
Sbjct: 61 ALVQGAVGFVTKKHNRTYVTVTPAAQPAE 89


>VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae
          Length = 86

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGS+RNGRDS+ KRLG+K FGGE V+ GNII RQRGT +H G NVG+G DHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 61 AKVEGHVEFRAKA-NGRTFVSV 81
          A  +G V+F  K  N R FVS+
Sbjct: 61 ALSDGKVKFEVKGPNNRKFVSI 82