BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0061.p         (214 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0779 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Rso ...    72   6e-13
RSc3286 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Rso ...    66   5e-11
PA3476 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Pae P...    65   9e-11
mlr6103 Non COG                                                        63   6e-10

>RSp0779 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Rso Ralstonia
           solanacearum
          Length = 182

 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 10  REELDPAHVGAMLRLRKRLFVDHCGWLLTTVGDAERDQFDCWYTEHCL-LFSGVELVGGF 68
           RE L P  V  + R R ++FV+   W L      E DQFD   T+H + L  G ++VG  
Sbjct: 6   RETLKPVAVSNLGRYRYKVFVERLKWHLPCEAGHEFDQFDRSDTKHLIALGQGEDIVGCA 65

Query: 69  RAIRTDYPYLTASVFPQLAV-RGFPSRRDAWEISRFGVL------PDVARSQTARVTYAL 121
           R + T  PYL  SVFP L   +  PS  + WE+SRF  +      P + +  + R    L
Sbjct: 66  RLLPTTRPYLLESVFPALLNGQPPPSSPEVWELSRFAAVDFSEDTPSLLKQFSVRAAVEL 125

Query: 122 M---FRFAELRGAKALVALADLSYERFLTRMDIRTRRYGPPQVIGND 165
           +      A+  GAK LV ++ +  ER L        R G P   G+D
Sbjct: 126 LRISMACAKHCGAKKLVTVSPMGVERLLAWAGFSWVRAGHPLRFGDD 172


>RSc3286 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Rso Ralstonia
           solanacearum
          Length = 204

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 14/164 (8%)

Query: 20  AMLRLRKRLFVDHCGWLLTTV-GDAERDQFDCWYTEHCLLFSG-VELVGGFRAIRTDYPY 77
           A+   R ++FV   GW L    G  ERDQ+D   T + +       + G  R + T  PY
Sbjct: 18  ALAHYRHQIFVGQLGWQLPMADGRFERDQYDRDDTVYVVARDADGAICGCARLLPTTRPY 77

Query: 78  LTASVFPQLAVRGFPSRRD--AWEISRFGVLPDVARSQTARVTYAL------MFRFAELR 129
           L   VF  L +RG P+      WE+SRF      +R++ AR  +A+      + + A  R
Sbjct: 78  LLKDVFAPLLMRGVPAPESPGVWELSRFAARSGASRARGARPDWAVRPMLASVVQCAAQR 137

Query: 130 GAKALVALADLSYERFLTRMDIRTRRYGPPQVIGNDRMGRPLTA 173
           GA+ L+ +  +S  R   R+ +R    GP + IG    GRP+ A
Sbjct: 138 GARRLIGVTFVSMVRLFRRIGVRAHHAGPVRCIG----GRPVVA 177


>PA3476 [TQ] COG3916 N-acyl-L-homoserine lactone synthetase Pae Pseudomonas
           aeruginosa
          Length = 201

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 11  EELDPAHVGAMLRLRKRLFVDHCGWLLTT---VGDAERDQFDCWYTEHCLLFSGVELVGG 67
           E L  A +  + R R ++F++  GW + +   V D E DQFD   T + +  S   + G 
Sbjct: 10  EGLSAAMIAELGRYRHQVFIEKLGWDVVSTSRVRDQEFDQFDHPQTRYIVAMSRQGICGC 69

Query: 68  FRAIRTDYPYLTASVFPQLAVRGFPSRRDAWEISRFGVLPDVARSQTARVTYALMFRFAE 127
            R + T   YL   VF  L     PS    WE+SR+         Q A   +    + A 
Sbjct: 70  ARLLPTTDAYLLKDVFAYLCSETPPSDPSVWELSRYAA-SAADDPQLAMKIFWSSLQCAW 128

Query: 128 LRGAKALVALADLSYERFLTRMDIRTRRYGPPQVIGNDRM 167
             GA ++VA+   + ER+  R  +  +R GPPQ +  + +
Sbjct: 129 YLGASSVVAVTTTAMERYFVRNGVILQRLGPPQKVKGETL 168


>mlr6103 Non COG
          Length = 213

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 21  MLRLRKRLFVDHCGWLLTTVGDAERDQFDCWYTEHCLLFSGVELV-GGFRAIRTDYPYLT 79
           M RLR R+F +   W + T G  E D FD     + +L      V GG R + +  P + 
Sbjct: 20  MHRLRYRVFKERLDWNVRTTGGFEIDSFDSLKPHYLVLRDSAGRVRGGVRLLPSTGPTML 79

Query: 80  ASVFPQL-AVRGFPSRRDAWEISRFGV-LPDVARSQTARV---TYAL---MFRFAELRGA 131
             VF +L   R  P     WE SRF + LP  A   +  +   TY L   M  F   R  
Sbjct: 80  RDVFSRLLEGRAAPEEPSVWESSRFALDLPPSAPKDSGSIAVATYELLAGMIEFGLSRLL 139

Query: 132 KALVALADLSYERFLTRMDIRTRRYGPPQVIGN 164
             +V + DL  ER L R      R GPPQ IG 
Sbjct: 140 THIVTVTDLRMERILRRAGWPLDRIGPPQTIGT 172