BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0048.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc563 [J] COG0268 Ribosomal protein S20 Atu Agrobacterium tumef...   106   1e-23
SMc01152 [J] COG0268 Ribosomal protein S20 Sme Sinorhizobium mel...   102   3e-22
BMEI1944 [J] COG0268 Ribosomal protein S20 Bme Brucella melitensis     98   6e-21
mll5582 [J] COG0268 Ribosomal protein S20 Mlo Mesorhizobium loti       97   7e-21
CC0007 [J] COG0268 Ribosomal protein S20 Ccr Caulobacter vibrioides    82   3e-16

>AGc563 [J] COG0268 Ribosomal protein S20 Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 88

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 70/87 (80%)

Query: 1  MANTTSAKKATRKIARRTIVNKSRRTQMRGAVRTVEEAIKSGDREAALKAMSRAEPELMK 60
          MANTTSAKKATRKIARRT VNK+RR+++RG +R VEEAI +GD   A +A+  A+PE+ +
Sbjct: 1  MANTTSAKKATRKIARRTAVNKARRSRVRGFIRKVEEAIATGDLAVATEALKAAQPEIQR 60

Query: 61 AAQRNIIHKNNASRKVSRLSQRIAKLA 87
          AA R ++H N ASRKVSRL+QR+  L+
Sbjct: 61 AATRGVLHGNTASRKVSRLAQRVKALS 87


>SMc01152 [J] COG0268 Ribosomal protein S20 Sme Sinorhizobium meliloti
          Length = 88

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 70/87 (80%)

Query: 1  MANTTSAKKATRKIARRTIVNKSRRTQMRGAVRTVEEAIKSGDREAALKAMSRAEPELMK 60
          MANTTSAKKATRKIARR+ VNK+RR+++R  VR VEEAI SGD+  A  A+  A+PELM+
Sbjct: 1  MANTTSAKKATRKIARRSAVNKARRSRIRSFVRKVEEAIASGDQALAAAALKAAQPELMR 60

Query: 61 AAQRNIIHKNNASRKVSRLSQRIAKLA 87
          AA + ++H N ASRKVSRL+QR+  L+
Sbjct: 61 AATKGVMHSNTASRKVSRLAQRVKSLS 87


>BMEI1944 [J] COG0268 Ribosomal protein S20 Bme Brucella melitensis
          Length = 88

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 67/86 (77%)

Query: 1  MANTTSAKKATRKIARRTIVNKSRRTQMRGAVRTVEEAIKSGDREAALKAMSRAEPELMK 60
          MANT SAKKA RKIA RT +NKSRR+++R  VR +E+A+ SGD++AA  A    EPELM+
Sbjct: 1  MANTPSAKKAVRKIAARTEINKSRRSRVRTFVRKLEDALLSGDKQAAEVAFKAVEPELMR 60

Query: 61 AAQRNIIHKNNASRKVSRLSQRIAKL 86
          AA + ++HKN A+RKVSRL++R+  L
Sbjct: 61 AASKGVVHKNTAARKVSRLAKRVKAL 86


>mll5582 [J] COG0268 Ribosomal protein S20 Mlo Mesorhizobium loti
          Length = 88

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 69/87 (79%)

Query: 1  MANTTSAKKATRKIARRTIVNKSRRTQMRGAVRTVEEAIKSGDREAALKAMSRAEPELMK 60
          MANT+SAKKATRKIARR  +NK+RR+++R  VR VEEA+ SGD+ AA  A   AEPELM+
Sbjct: 1  MANTSSAKKATRKIARRAAINKNRRSRVRTYVRQVEEALASGDKAAAQAAFKAAEPELMR 60

Query: 61 AAQRNIIHKNNASRKVSRLSQRIAKLA 87
          AA + +IHKN ASRKVSRL+ R+  L+
Sbjct: 61 AATKGVIHKNTASRKVSRLAARLKVLS 87


>CC0007 [J] COG0268 Ribosomal protein S20 Ccr Caulobacter vibrioides
          Length = 91

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1  MANTTSAKKATRKIARRTIVNKSRRTQMRGAVRTVEEAIKSGDREAALKAMSRAEPELMK 60
          MAN   AKKA RKIARRT VN +RR+++R  +R  E+AI  GD   A  A   A+ ELM+
Sbjct: 1  MANNPGAKKAIRKIARRTEVNTARRSRVRTFLRKFEDAIAKGDVAVAKAAFVEAQSELMR 60

Query: 61 AAQRNIIHKNNASRKVSRLSQRIAKLAK 88
          A  + ++H N  SRKVSRL+ R+ KL K
Sbjct: 61 AVSKGVVHPNTGSRKVSRLAARLKKLDK 88