BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0033.p (536 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transpor... 573 e-163 AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport... 569 e-162 mll0760 Non COG 499 e-141 RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport... 352 1e-96 YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport... 338 2e-92 >SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 537 Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust. Identities = 319/530 (60%), Positives = 386/530 (72%), Gaps = 8/530 (1%) Query: 14 LSILLLSCLIMPALAGP--FEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISALQDG 71 L+ L L + P L D V + S+ + I +A +G I+ AL +G Sbjct: 9 LAALFLFVAMAPGLRAEEGLRDLVNALGEAKLSEMDEHIAALAKTGKPEVVAILEALGEG 68 Query: 72 RLSADPDSKKVFITQADGK---IVDATTGAAVDKLPDNA-AAVRLNNRLRRTVEAALGGL 127 L A +V +T+ G + D +G + + P A + +R+NN +RR V ALG L Sbjct: 69 ELYARKADGQVLLTKESGSNLTLTDPISGDSAGEAPKAALSKIRVNNSVRRAVRTALGSL 128 Query: 128 TLLSPDPAKRLAAAQSVFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDAS 187 TLLSPD +RL AAQSV +S + + L +E ALA E +++ +ARA ++L SD Sbjct: 129 TLLSPDRNQRLRAAQSVLQSPDADALGVIENALAAEKDGAVRAVLEQARATMLLL-SDRP 187 Query: 188 DSDKLDAVAVVKARGDQEALALLTG-LGDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWY 246 +K +AV +++ G +EAL +L+ LG + A+ SI+ A W+ QN WY Sbjct: 188 VEEKKEAVRLLEENGGREALPILSAALGSADESLKPDIEAALASIEQAQAFWNAGQNIWY 247 Query: 247 GLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLL 306 GLSLGSVLLLAAIGLAITFGVMG+INMAHGEMVMLGAYTTF+VQ+V+RT +P LF++SL Sbjct: 248 GLSLGSVLLLAAIGLAITFGVMGIINMAHGEMVMLGAYTTFLVQDVVRTSFPHLFEWSLA 307 Query: 307 IAVPLAFLVAGLIGVVIERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGN 366 IA+PLAFLV G +G+ +ER +IRFLYGRPLETLLATWG+SL+LQQ VRT FGPTNREVGN Sbjct: 308 IALPLAFLVTGAVGLALERGVIRFLYGRPLETLLATWGISLILQQTVRTIFGPTNREVGN 367 Query: 367 PSWMSGAFELGQITITYNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMG 426 PSWMSGAFELG + IT+NRLWI+ F LAVFA LL +L+ T +GL+MRAVTQNRRMA+SMG Sbjct: 368 PSWMSGAFELGGLAITWNRLWIIVFALAVFAALLFLLKKTPMGLQMRAVTQNRRMASSMG 427 Query: 427 IATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLV 486 I T VDALTF LGSGIAGIAGVALSQIDNVSPNLGQ YIIDSFM VVFGGVGNLWGTLV Sbjct: 428 IRTPWVDALTFALGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLV 487 Query: 487 GAFTLGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 GAF+LGI NKFLEP AGAVLGKI +LVLIILFIQKRPRGLFALKGRAVEA Sbjct: 488 GAFSLGILNKFLEPYAGAVLGKILVLVLIILFIQKRPRGLFALKGRAVEA 537 >AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 616 Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust. Identities = 300/507 (59%), Positives = 377/507 (74%), Gaps = 6/507 (1%) Query: 35 VAKFANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADPDSKKVFITQ---ADGKI 91 + + +F E IG++AA+G+A P + A G L VF+T+ +D + Sbjct: 111 IDQLGTADFKQAEVLIGQIAATGDARVVPALEAFAAGDLYVRKSDNLVFMTKPAGSDFTL 170 Query: 92 VDATTGAAVDKLPDNA-AAVRLNNRLRRTVEAALGGLTLLSPDPAKRLAAAQSVFKSHEE 150 +D TG + P A +R+NN LRR + AA+GGLTLLSP+ A RL+AA +V K+ Sbjct: 171 IDPLTGESAGSAPKAAVTKIRVNNNLRRVIRAAMGGLTLLSPERAVRLSAADAVLKAPSA 230 Query: 151 NLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAVVKARGDQEALALL 210 L +E A++KE+ ++ EARA + L SD K +A+A +K G ++A+++L Sbjct: 231 ENLELLEAAISKETDNEVRTRMEEARA-VSLLSSDRPLEVKKEAIATIKKLGGRDAISIL 289 Query: 211 TGLGDQ-PPLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSVLLLAAIGLAITFGVMG 269 P + A++SI+S LA W QN WYGLSLGSVLLLAAIGLAITFGVMG Sbjct: 290 MAATPSVDPSLKPDVDEAISSIESALAFWDYAQNVWYGLSLGSVLLLAAIGLAITFGVMG 349 Query: 270 VINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAFLVAGLIGVVIERTIIR 329 +INMAHGEMVM+GAY+TF+VQEVIR+ +P LFD+SL IA+P+AFLV G +G+V+ER +IR Sbjct: 350 IINMAHGEMVMIGAYSTFMVQEVIRSHFPGLFDWSLAIALPVAFLVTGFVGLVMERGVIR 409 Query: 330 FLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGAFELGQITITYNRLWIL 389 FLYGRPLETLLATWG+SL+LQQ VR+ FGPTNREVG+P WMSG+F +G + T+NR+WI+ Sbjct: 410 FLYGRPLETLLATWGISLMLQQGVRSIFGPTNREVGSPGWMSGSFSVGYLNFTWNRVWIV 469 Query: 390 CFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSGIAGIAGV 449 CF+L+VF LL +L+ +A GL+MRAVTQNRRMA+SMGI T VDA TF LGSG+AG+AGV Sbjct: 470 CFSLSVFFALLVLLKRSAFGLQMRAVTQNRRMASSMGIRTPWVDAFTFALGSGVAGLAGV 529 Query: 450 ALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLGIANKFLEPVAGAVLGKI 509 ALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTLVGA +LG+ NKFLEP GAVLGKI Sbjct: 530 ALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLVGALSLGVLNKFLEPTVGAVLGKI 589 Query: 510 AILVLIILFIQKRPRGLFALKGRAVEA 536 +LVLIILFIQKRPRGLFALKGRA+EA Sbjct: 590 LVLVLIILFIQKRPRGLFALKGRAIEA 616 >mll0760 Non COG Length = 317 Score = 499 bits (1286), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/304 (81%), Positives = 273/304 (89%) Query: 233 SNLAMWSMVQNAWYGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEV 292 S LA W QN WYG+SLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQ+V Sbjct: 14 STLAFWDAGQNIWYGISLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQQV 73 Query: 293 IRTRYPALFDYSLLIAVPLAFLVAGLIGVVIERTIIRFLYGRPLETLLATWGLSLVLQQA 352 IRT +P LFD+SL+IA+PLAFLVA L+G+ IER +IRFLYGRPLETLLATWG+SL+LQQA Sbjct: 74 IRTSFPGLFDWSLVIALPLAFLVAALVGLAIERGVIRFLYGRPLETLLATWGVSLILQQA 133 Query: 353 VRTAFGPTNREVGNPSWMSGAFELGQITITYNRLWILCFTLAVFAILLAMLRYTALGLEM 412 VR+ FGPTN+EVGNPSWMSG+F++GQ+ IT+NRLWIL F L VF +LL +++ T GL+M Sbjct: 134 VRSIFGPTNQEVGNPSWMSGSFDIGQLAITWNRLWILVFALTVFGVLLYVMKRTPWGLQM 193 Query: 413 RAVTQNRRMAASMGIATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMG 472 RAVT NRRMAASMGI T VDALTF LGSGIAGIAGVALSQIDNVSPNLG+ YIIDSFM Sbjct: 194 RAVTANRRMAASMGIRTPWVDALTFALGSGIAGIAGVALSQIDNVSPNLGRGYIIDSFMV 253 Query: 473 VVFGGVGNLWGTLVGAFTLGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGR 532 VVFGGVGNLWGTLVGAF+LGI NKFLEP AGAVLGKI +LVLIILFIQKRPRGLFALKGR Sbjct: 254 VVFGGVGNLWGTLVGAFSLGIVNKFLEPYAGAVLGKIVVLVLIILFIQKRPRGLFALKGR 313 Query: 533 AVEA 536 AVEA Sbjct: 314 AVEA 317 >RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 538 Score = 352 bits (904), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 237/504 (47%), Positives = 315/504 (62%), Gaps = 9/504 (1%) Query: 38 FANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADPDSKKVFITQADGKIVDATTG 97 A D+F + +AA+ A PI+ ALQ+ L P + + Q + +DA +G Sbjct: 39 LAEDDFDAKVKVLNALAAAPAEQAGPILRALQNDALFYAPAAG--MLRQEGERYLDAISG 96 Query: 98 AAVDKLPDNAAAVRLNNRLRRTVEAALGGLTLLSPDPAKRLAAAQSVFKSHEENLLPTVE 157 V D+ A+ LNN LR V++A G L SPD A R A ++ E V+ Sbjct: 97 QPVAMKADDLQALTLNNALRAQVDSAASGFVLQSPDRAVRAQAIDTLLAHPETASRTVVD 156 Query: 158 GALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAVV----KARGDQEALALLTGL 213 A +E+ ++ A + L D S ++KL+A+ ++ + Q LL Sbjct: 157 AARKQETDPELRTRLHLLWANLAL--DDGSPAEKLEALRLLAGDTNPQTRQRIAPLLAKD 214 Query: 214 GDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSVLLLAAIGLAITFGVMGVINM 273 ++ AA A+ ++ + ++ N + GLSLGSVLLLAA+GLAIT+G++GVINM Sbjct: 215 SGADDVLRAAARQALDNLAAQARKAELIGNLFAGLSLGSVLLLAALGLAITYGLIGVINM 274 Query: 274 AHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAFLVAGLIGVVIERTIIRFLYG 333 AHGE +M+GAY T+VVQ + R +PA FD+ L A+P AFL A ++G V+ER ++R LYG Sbjct: 275 AHGEFLMIGAYATYVVQTLFRNHFPAAFDWYLPAALPAAFLAAAVVGFVLERMVLRHLYG 334 Query: 334 RPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGAFELGQ-ITITYNRLWILCFT 392 RPLETLLAT+G+SL+L QAVR+ FG N EV NPSWMSG L + + YNRL IL F Sbjct: 335 RPLETLLATFGVSLLLMQAVRSVFGAQNVEVANPSWMSGGIALYPGLILPYNRLVILAFA 394 Query: 393 LAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSGIAGIAGVALS 452 L V + A+L T LGL +RA TQNR MAA +G+ T +VD+ F G+GIAG+ G ALS Sbjct: 395 LVVVTLAWAVLNRTRLGLFVRATTQNRAMAACVGVRTWKVDSYAFAFGAGIAGLGGCALS 454 Query: 453 QIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLGIANKFLEPVAGAVLGKIAIL 512 QI NV P+LGQ YIIDSFM VV GGVG L GT+VGAF LG+ NK +EP GAVL KI +L Sbjct: 455 QIGNVGPDLGQGYIIDSFMAVVLGGVGQLAGTIVGAFGLGLINKCIEPFYGAVLAKIFVL 514 Query: 513 VLIILFIQKRPRGLFALKGRAVEA 536 VLI+LFIQKRP+GLFALKGR+ EA Sbjct: 515 VLIVLFIQKRPQGLFALKGRSAEA 538 >YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ype Yersinia pestis Length = 533 Score = 338 bits (868), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 241/520 (46%), Positives = 330/520 (63%), Gaps = 16/520 (3%) Query: 18 LLSCLIMPALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADP 77 LL L M A+AGP +D VA AN T + + A +A P++ AL+ + D Sbjct: 22 LLLGLSMSAMAGPAQDFVA--ANRAQQAT--LLQQWATEPDASRLPLLQALKQETVVVD- 76 Query: 78 DSKKVFITQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGGLTLLSPDPAKR 137 + + FI + + +++ G + + + LNNRLR + AL L+S D R Sbjct: 77 SAGQAFIK--NNQSINSLEGQS--QPTGTLKKIWLNNRLRILIANALAAQRLVSDDETVR 132 Query: 138 LAAAQSVFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAV 197 L AA + + + + LP + L E+ +K+A + A A + L +D++ +L+AV + Sbjct: 133 LQAAVELQRQAQSDQLPLLNQRLKLETDSQVKEALSIALANLQL--TDSNPQVRLNAVQL 190 Query: 198 VKARGDQEALALLTGLGD---QP-PLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSV 253 + G + + L L D +P V AAAT++ IQ L + ++ + GLSLGS+ Sbjct: 191 LGQSGSPQTQSRLQSLTDTQVEPNEQVRAAAATSLKQIQHRLMIGEVIGQVFSGLSLGSI 250 Query: 254 LLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAF 313 LLLAA+GLAIT+G++GVINMAHGEM+MLGAY+ ++VQ + + P LIA+P+AF Sbjct: 251 LLLAALGLAITYGLLGVINMAHGEMLMLGAYSAYLVQSLFQQFAPHWLALYPLIALPVAF 310 Query: 314 LVAGLIGVVIERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGA 373 + IG+ +ERT+IR LYGRPLETLLATWG+SL+L Q +R FGP N EV NP+W+SG Sbjct: 311 FITAGIGMALERTVIRHLYGRPLETLLATWGISLMLIQGIRMLFGPQNLEVANPAWLSGG 370 Query: 374 FE-LGQITITYNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRV 432 + L + + +NR+ ++ F + V + +L T LGL++RAVTQNR MAA G+AT RV Sbjct: 371 VQVLPNLVLPWNRIAVIAFVIIVLLLTWLLLNKTRLGLQVRAVTQNRAMAACCGVATGRV 430 Query: 433 DALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLG 492 D L FGLGSGIAG+ GVALSQ+ NV P LGQ YIIDSF+ VV GGVG L G++V A LG Sbjct: 431 DMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVVAALGLG 490 Query: 493 IANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGR 532 + NK LEP GAVLGKI ILVLIILFIQKRP+GLFALKGR Sbjct: 491 MLNKILEPQIGAVLGKILILVLIILFIQKRPQGLFALKGR 530