BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0030.p         (97 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2239 [J] COG0361 Translation initiation factor 1 (IF-1) Rso R...   107   9e-24
CC2343 [J] COG0361 Translation initiation factor 1 (IF-1) Ccr Ca...   103   1e-22
BMEI1671 [J] COG0361 Translation initiation factor 1 (IF-1) Bme ...   102   2e-22
SMc02310 [J] COG0361 Translation initiation factor 1 (IF-1) Sme ...   102   2e-22
RP814 [J] COG0361 Translation initiation factor 1 (IF-1) Rpr Ric...    99   3e-21

>RSc2239 [J] COG0361 Translation initiation factor 1 (IF-1) Rso Ralstonia
          solanacearum
          Length = 72

 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 62/72 (86%)

Query: 1  MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTIEMSPY 60
          MAKEELI+FEG+V+E LPD R+RVQL+ G E+ AY +GKM+K+RI+ LAGDRV +EMSPY
Sbjct: 1  MAKEELIEFEGVVSEALPDNRFRVQLENGVEVWAYASGKMQKHRIRILAGDRVKLEMSPY 60

Query: 61 DLEKGRLIFRHK 72
          DL KGR+ +RHK
Sbjct: 61 DLTKGRINYRHK 72


>CC2343 [J] COG0361 Translation initiation factor 1 (IF-1) Ccr
          Caulobacter vibrioides
          Length = 72

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 62/72 (86%)

Query: 1  MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTIEMSPY 60
          MAKEEL++F G V+E+LP+A +RV+L+  HEI+A+TAGKM+KNRI+ LAGD+V +EM+PY
Sbjct: 1  MAKEELLEFPGTVSELLPNATFRVKLENDHEIIAHTAGKMRKNRIRVLAGDKVLVEMTPY 60

Query: 61 DLEKGRLIFRHK 72
          DL KGR+ +R K
Sbjct: 61 DLTKGRITYRFK 72


>BMEI1671 [J] COG0361 Translation initiation factor 1 (IF-1) Bme Brucella
           melitensis
          Length = 101

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 63/72 (87%)

Query: 1   MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTIEMSPY 60
           MAKEE+++F G+VTE+LP+A +RV+L+  HEI+A+TAG+M+KNRI+ LAGD+V +EM+PY
Sbjct: 30  MAKEEVLEFPGVVTELLPNAMFRVKLENEHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPY 89

Query: 61  DLEKGRLIFRHK 72
           DL KGR+ +R K
Sbjct: 90  DLTKGRITYRFK 101


>SMc02310 [J] COG0361 Translation initiation factor 1 (IF-1) Sme
          Sinorhizobium meliloti
          Length = 72

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 63/72 (87%)

Query: 1  MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTIEMSPY 60
          MAKEE+++F G+VTE+LP+A +RV+L+  HEI+A+TAG+M+KNRI+ LAGD+V +EM+PY
Sbjct: 1  MAKEEVLEFPGVVTELLPNATFRVKLENEHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPY 60

Query: 61 DLEKGRLIFRHK 72
          DL KGR+ +R K
Sbjct: 61 DLTKGRITYRFK 72


>RP814 [J] COG0361 Translation initiation factor 1 (IF-1) Rpr Rickettsia
          prowazekii
          Length = 71

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 60/71 (84%)

Query: 1  MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTIEMSPY 60
          M+K++LIQF G V E+LP+A +RV+L+  H I+A+T+G+M+KNRI+ L GD+VT+EM+PY
Sbjct: 1  MSKDDLIQFTGTVLELLPNATFRVKLENDHIIIAHTSGRMRKNRIRILLGDKVTVEMTPY 60

Query: 61 DLEKGRLIFRH 71
          DL KGR+I RH
Sbjct: 61 DLTKGRVIHRH 71