BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0029.p         (70 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefa...   119   2e-27
BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis      119   2e-27
SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti   115   2e-26
msr6259 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti        112   2e-25
CC2903 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides     110   1e-24

>AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 98

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          ++ GTVKWFNATKG+GFIQPD GG DVFVHISAVERAG+ +L +GQKISYEIV DRRSGK
Sbjct: 30 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRRSGK 89

Query: 61 SSADNLRAA 69
          SSADNL+AA
Sbjct: 90 SSADNLQAA 98


>BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis
          Length = 101

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 1   VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
           ++ GTVKWFN TKG+GFIQPD+GG DVFVHISAV+RAGL TL EGQK+SYEIV DRRSG+
Sbjct: 33  MATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92

Query: 61  SSADNLRAA 69
           SSADNL AA
Sbjct: 93  SSADNLVAA 101


>SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          ++ GTVKWFN+TKG+GFIQPD+G  DVFVHISAVERAGL TL++GQK+S+E+  DRRSGK
Sbjct: 1  MASGTVKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGK 60

Query: 61 SSADNLRA 68
          +SADNLRA
Sbjct: 61 TSADNLRA 68


>msr6259 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti
          Length = 70

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          +++GTVKWFN+TKG+GFIQPD GG DVFVHISAVERAGL TL +GQKI+YE+  DRR+GK
Sbjct: 1  MAIGTVKWFNSTKGFGFIQPDNGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRRTGK 60

Query: 61 SSADNLRAAG 70
          SSA NL  AG
Sbjct: 61 SSAGNLSKAG 70


>CC2903 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides
          Length = 69

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 60/69 (86%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          ++ GTVKWFN+TKG+GFIQPD GG D+FVHISAVER+GLG+L EGQKISYE   DRRSGK
Sbjct: 1  MATGTVKWFNSTKGFGFIQPDNGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRRSGK 60

Query: 61 SSADNLRAA 69
          +SA  L+AA
Sbjct: 61 TSAGQLQAA 69