BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0028.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2951 Non COG                                                         85   1e-16
mll5590 [U] COG4961 Flp pilus assembly protein TadG Mlo Mesorhiz...    76   4e-14
SMc04118 [U] COG4961 Flp pilus assembly protein TadG Sme Sinorhi...    74   2e-13
AGc239 [U] COG4961 Flp pilus assembly protein TadG Atu Agrobacte...    66   6e-11

>CC2951 Non COG
          Length = 183

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 11/190 (5%)

Query: 14  RSVAALCNDRRGLAAVEFAFVLPLMLVLFFGTVEFSSGVAVDRKVTLMARAASDLTSQST 73
           R +++   DRRG++AVEFA + P+M+V++ G  E +  +   R+++ +A    DL +QS 
Sbjct: 5   RPLSSFWRDRRGVSAVEFALIAPVMIVMYCGLAEVTQAMMAQRRLSNIASQIGDLVAQSN 64

Query: 74  QVVDADLQNFFSASVGIMTPYDPTPTKVTLSEIYVDASKVARIQWSKAGVMATGATQATL 133
           Q     + + F+    IM P+     ++ ++ +  DA+    + WS+A          T+
Sbjct: 65  QTGPTKMADVFTIGGIIMAPFPTATLRMCVASVTSDATGRDTVAWSRA--------SGTM 116

Query: 134 TASSRSQGDVVTSVVPAALLVAGTYLIFSEVSYKYVPTVGYVMAKSGINLTDVAFTRPRQ 193
           T +  +QG V+T+ VP  +L A   +I +  SY Y   +  VM  S I      + RPR+
Sbjct: 117 T-NCPAQGAVLTN-VPVGVLPASRSVILARASYVYTSPIKLVMPAS-ITFQRTFYLRPRK 173

Query: 194 SVCVFYAPTS 203
           +  + ++ TS
Sbjct: 174 AETILWSTTS 183


>mll5590 [U] COG4961 Flp pilus assembly protein TadG Mlo Mesorhizobium loti
          Length = 421

 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 34/217 (15%)

Query: 6   KARAAALLRSVAAL------------CNDRRGLAAVEFAFVLPLMLVLFFGTVEFSSGVA 53
           + +A A++R+ A L             +DR+G+AAVEFA ++P++L+++F T+E S  + 
Sbjct: 209 RKKANAMMRAGAHLKIAESWNRAIGFWSDRKGVAAVEFALIVPILLIMYFMTMEASQAIE 268

Query: 54  VDRKVTLMARAASDLTSQSTQVVDADLQNFFSASVGIMTPYDPTPTKVTLSEIYV--DAS 111
             +KV+ +    +DL +Q   +V ADL          + PY+ +   +T++ I V  D  
Sbjct: 269 TSKKVSRIGSMVADLVTQQPTIVKADLDAIMKIGTSTIQPYNRSTPNITITAIQVTTDTP 328

Query: 112 KVARIQWSKAGVMATGATQATLTASSRSQGDVVTSVVPAALLVAGTYLIFSEVSYKYVPT 171
               + WS+         Q      S +     T+ VPA L VAGT+LI  + +  Y P 
Sbjct: 329 PKVLVVWSR---------QVANGVYSAAAAAGTTTTVPATLKVAGTFLIRVDSNLSYTPI 379

Query: 172 VGY---VMAKSG--------INLTDVAFTRPRQSVCV 197
           +G+      K G        I + +  + RPR+S+ +
Sbjct: 380 IGWTTDTQQKLGLTKSLTTTIPMGETYYLRPRRSLTI 416


>SMc04118 [U] COG4961 Flp pilus assembly protein TadG Sme Sinorhizobium
           meliloti
          Length = 194

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%)

Query: 5   MKARAAALLRSVAALCNDRRGLAAVEFAFVLPLMLVLFFGTVEFSSGVAVDRKVTLMARA 64
           +  R   L  +   L  DRRG  AVEFA V PL++  + G  E S G  V RKV   + A
Sbjct: 4   LHTRKQHLWGAFHGLLRDRRGAGAVEFAIVAPLLIAAYVGAFELSLGFTVARKVGRASSA 63

Query: 65  ASDLTSQSTQVVDADLQNFFSASVGIMTPYDPTPTKVTLSEIYVDASKVARIQWSKA 121
            SD+ +Q  QV  A L    + +  ++ PYD +   + ++ I V+ +   ++ WS+ 
Sbjct: 64  VSDIVTQEQQVSKAFLDGMRNVARNMLVPYDGSDYDLKITGIQVNGTTEGKVAWSRG 120


>AGc239 [U] COG4961 Flp pilus assembly protein TadG Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 197

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 12/154 (7%)

Query: 12  LLRSVAALCNDRRGLAAVEFAFVLPLMLVLFFGTVEFSSGVAVDRKVTLMARAASDLTSQ 71
           L+  V+    D RG+ AVEFA V P++L L+  + E + G    ++ +  A   +DL S+
Sbjct: 16  LIALVSRFAGDSRGVGAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISK 75

Query: 72  STQVVDADLQNFFSASVGIMTPYDPTPTKVTLSEIYVDASKVARIQWSKAGVMATGATQA 131
           +  V    L      +  +  PY     K+ +S I +DA K A+I WS          + 
Sbjct: 76  TGSVDKTYLTGMQDVAAAVFAPYSTKGLKLKISGIKIDAQKQAKITWS--------WDEK 127

Query: 132 TLTASSRSQGDVVTSVVPAALLVAGTYLIFSEVS 165
            L     + G VVT  VP  LLV  ++LI  E+S
Sbjct: 128 NL--RPYAVGSVVT--VPTRLLVQDSFLIHVELS 157