BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0027.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2950 Non COG                                                        120   2e-27
SMc04117 [U] COG4961 Flp pilus assembly protein TadG Sme Sinorhi...    83   4e-16
AGc240 [U] COG4961 Flp pilus assembly protein TadG Atu Agrobacte...    71   1e-12

>CC2950 Non COG
          Length = 183

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 12/176 (6%)

Query: 8   FARLLHRFRRNRRGATAVEFAMVAPLFFGLLFAIIEVAMIFFASQVLETVTQDSARMIMT 67
            AR   RF R   GATAVEFA+VA  F  LLFAIIE+ ++F  S  LE    D+ R I T
Sbjct: 14  LARSAGRFARADEGATAVEFALVAIPFLMLLFAIIELGLVFLVSITLENAVIDAGRTIRT 73

Query: 68  GQAQGASYTQQQFKNFVCGQVSAL-FDCANGISVDVRSYPA-ATGFSSVNIAPPIDSNNA 125
           G+ Q        FK  VC ++S L   C++ + +DVR++   ATG +S        + N 
Sbjct: 74  GEVQTTGGNANSFKTAVCNRMSWLGSKCSSALRLDVRTFTDYATGQAS--------ATNT 125

Query: 126 FIP-TMKWCPGKDGDVVVVRLFYQWPLFVTKLGFNVANLANGKRLLTATATFKNEP 180
            +P TM W PG  G +VVVR +Y WPL    L   + + +NG R++ A  +F NEP
Sbjct: 126 TVPTTMNWNPGASGSIVVVRAYYTWPLVTPMLNTGLQS-SNGNRIIYAATSFTNEP 180


>SMc04117 [U] COG4961 Flp pilus assembly protein TadG Sme Sinorhizobium
           meliloti
          Length = 204

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 26/197 (13%)

Query: 2   PLPAHSFARLLHRFRRNRRGATAVEFAMVAPLFFGLLFAIIEVAMIFFASQVLETVTQDS 61
           PLP   F RL+     +R+GATA+EFA++A  FF ++FA IE  + F   Q+L   T   
Sbjct: 13  PLPRGLFRRLIG----DRKGATAIEFAILALPFFIVVFASIETFIAFAGEQLLANATDTL 68

Query: 62  ARMIMTGQ-----AQGASYTQQQFKNFVCGQVSALFDC-------ANGISVDVRSYPAAT 109
           AR I TG+      +    T+ QF+   C +++ +  C       A+ + +DVR  PA  
Sbjct: 69  ARKIRTGEITTDIGKPGFTTETQFRQAFCDEIAIMMTCSATEAEQASKLHLDVRKLPA-- 126

Query: 110 GFSSVNIAPPIDSNNAFIPTMKWCPGKDGDVVVVRLFYQWPL-------FVTKLGFNVAN 162
             S+   A P + ++       + PG   D  +VR +Y+W +        VTKL     +
Sbjct: 127 DLSAFPKAVPRNGSDLDTSGFTFAPGGPNDYTMVRAYYRWTVITDLVRPLVTKLR-PAGD 185

Query: 163 LANGKRLLTATATFKNE 179
                 L+ +TATF+NE
Sbjct: 186 SMPRDYLMVSTATFRNE 202


>AGc240 [U] COG4961 Flp pilus assembly protein TadG Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 211

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 21/192 (10%)

Query: 11  LLHRFRRNRRGATAVEFAMVAPLFFGLLFAIIEVAMIFFASQVLETVTQDSARMIMTGQA 70
           LL +F  +R G  A+EFA++A  +F ++FAIIE  +   A QV+   T+  +R + TGQ 
Sbjct: 22  LLEKFGFSRDGTAAIEFAILAIPYFLVVFAIIETFIALMAEQVVANATETMSRRLRTGQI 81

Query: 71  QGASYTQQQFKNFVCGQVSALFDCANG-------ISVDVRSYPAATGFSSVNIAPPIDSN 123
             +S T++ F+   C +VS +  C+         + VD+RS+   T F  +    P+ + 
Sbjct: 82  -SSSITKEDFRRSFCNEVSVMIACSEDEIKKEEKLYVDLRSF---TAFKDIPTTIPLKAY 137

Query: 124 NAFIP----TMKWCPGKDGDVVVVRLFYQWPLFVTKLGFNVANL--ANGKR----LLTAT 173
             +         + PG    + ++R++Y+W +    +   +  +  A+G      L+ AT
Sbjct: 138 GEYYDLDTAQFGFKPGGPETINMLRVYYRWRVVADIIRPYLTKIRPADGSMPSHFLIVAT 197

Query: 174 ATFKNEPSGTAG 185
           + F +E   T G
Sbjct: 198 SAFMSEKYITGG 209