BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0015.p         (48 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1564 [U] COG4965 Flp pilus assembly protein TadB Sme Sinorhiz...    63   2e-10
AGc372 [U] COG4965 Flp pilus assembly protein TadB Atu Agrobacte...    60   2e-09
SMc02821 [U] COG4965 Flp pilus assembly protein TadB Sme Sinorhi...    58   4e-09
mlr5603 [U] COG4965 Flp pilus assembly protein TadB Mlo Mesorhiz...    57   8e-09

>SMa1564 [U] COG4965 Flp pilus assembly protein TadB Sme Sinorhizobium
           meliloti
          Length = 333

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 37/44 (84%)

Query: 5   VFLTTPDYIALLWTNSMGQLMLVACAIWMSMGVLVMKKMINFDF 48
           V+  +PDY+ALL+T  +G++++V C +WM +G+LVM+KMINFDF
Sbjct: 290 VYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFDF 333


>AGc372 [U] COG4965 Flp pilus assembly protein TadB Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 334

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 39/47 (82%)

Query: 1   VMILVFLTTPDYIALLWTNSMGQLMLVACAIWMSMGVLVMKKMINFD 47
           VM+LV  T+PDY+++L+T++ G L+L A AIWM +G+ +M++MINFD
Sbjct: 287 VMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMINFD 333


>SMc02821 [U] COG4965 Flp pilus assembly protein TadB Sme Sinorhizobium
           meliloti
          Length = 336

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 37/47 (78%)

Query: 1   VMILVFLTTPDYIALLWTNSMGQLMLVACAIWMSMGVLVMKKMINFD 47
           V  LV+LT+PDY+ +L+T+  G +++ A A+WMS+G+ VM+ MINFD
Sbjct: 289 VATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFD 335


>mlr5603 [U] COG4965 Flp pilus assembly protein TadB Mlo Mesorhizobium loti
          Length = 337

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 37/47 (78%)

Query: 1   VMILVFLTTPDYIALLWTNSMGQLMLVACAIWMSMGVLVMKKMINFD 47
           V  LV+L++PDY+  L+  S+G L+L   A+WMS+G+LVM+KM+NF+
Sbjct: 290 VAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMRKMMNFE 336