BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0142.0002.p         (232 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr9703 [K] COG1475 Predicted transcriptional regulators Mlo Mes...   303   3e-82
RSc2617 [K] COG1475 Predicted transcriptional regulators Rso Ral...   112   6e-25
YPMT1.59c [K] COG1475 Predicted transcriptional regulators Ype Y...    99   6e-21
PSLT068 [K] COG1475 Predicted transcriptional regulators Sty Sal...    65   2e-10

>mlr9703 [K] COG1475 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 747

 Score =  303 bits (775), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 176/217 (81%)

Query: 11  AVFFTSVNVVKQRLRLASVSPALLDIYAEDGMSLEQLMAFTVTADHGRQEQVWQAISGSW 70
           A FF SVNVVKQRL+L +VSPALLD+YAEDGM++ QL AF+V+ DH RQEQVW+AI  +W
Sbjct: 190 AAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQVWEAIKNNW 249

Query: 71  QKEPYQIRRMLTEKTARASDRRAVFVGLDAYEAAGGVVLRDLFQSDDGGWLEDVALLDRL 130
            KEPYQIRRMLTE T RASD+RAVFVGL+ YEAAGG VLRDLFQSDDGGWL+DV LL+RL
Sbjct: 250 SKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWLQDVPLLERL 309

Query: 131 VTEKLKAEAETIAAEGWKWIEVAIDFPYGHTRGLRELDSVSAGLTAEEQATIEALKAEFA 190
           V +KL+  A+ IA EGWKWIEVA+ FPYG   GLREL+     L++EE+AT+ AL+ E  
Sbjct: 310 VKDKLQMMADEIANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKATLHALRDELR 369

Query: 191 RLEAEHDGADELPDEVDQRLGEIETALAAFDDRPIVY 227
            L+AE++ ADELPDEVDQR GE+E+A+   + RP+ +
Sbjct: 370 SLQAEYEEADELPDEVDQRFGELESAIKTLEARPVRF 406


>RSc2617 [K] COG1475 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 597

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 86/141 (60%), Gaps = 3/141 (2%)

Query: 13  FFTSVNVVKQRLRLASVSPALLDIYAEDGMSLEQLMAFTVTADHGRQEQVWQAISGSWQK 72
           F  S  VV++RL+LA+VSP LL  Y    ++L+QLMA  +T DH  QE  +   + +WQ+
Sbjct: 160 FSVSPLVVQRRLKLANVSPRLLADYRAKAVTLDQLMALAITDDHAAQETAFYD-APTWQR 218

Query: 73  EPYQIRRMLTEKTARASDRRAV-FVGLDAYEAAGGVVLRDLFQSDDGG-WLEDVALLDRL 130
            P Q+R  LTE+   A     V FVGLD Y AAGG V RDLF   D G +L D ALL+RL
Sbjct: 219 NPSQLRDRLTEREIDAYRHPLVRFVGLDTYGAAGGGVRRDLFAEGDAGVYLTDAALLERL 278

Query: 131 VTEKLKAEAETIAAEGWKWIE 151
             +KL   A  + AEGW W++
Sbjct: 279 AQDKLAGIAAEVKAEGWAWVD 299


>YPMT1.59c [K] COG1475 Predicted transcriptional regulators Ype Yersinia
           pestis
          Length = 669

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 19/208 (9%)

Query: 8   IAIAVFFTSVNVVKQRLRLASVSPALLDIYAEDGMSLEQLMAFTVTADHGRQEQVWQAIS 67
           I  A+ F S +V ++ L+LA+++P+L++  A+D +++EQ  A  +  D  RQ +V++ + 
Sbjct: 160 IGDALGFGSRHV-QRMLKLANLAPSLMEKLAQDELTVEQCQALCLEDDPARQVEVFENVK 218

Query: 68  GSWQKEP-YQIRRMLTEKTARASDRRAVFVGLDAYEAAGGVVLRDLFQSDDGGWLEDVAL 126
            SW   P + I+R +TE   R  + +  F+G DAYEAAGG V  DLF  D+G    D  L
Sbjct: 219 ASWSNAPAHLIKRAITETEMRTDNAKFRFIGRDAYEAAGGYVREDLFSQDEGDGTADSVL 278

Query: 127 LDRLVTEKLKAEAETIAA-EGWKWIEVAIDFPYGHTRGLREL------DSVSAGLTAEEQ 179
           ++RLV EKL+  A+ I   EGW W        + H    +E       D V    T E+Q
Sbjct: 279 VERLVQEKLERIAQDIQQREGWAWSRGRAARIWYHGEDGKEFVQPVEPDPV---YTPEQQ 335

Query: 180 ATIEALKAEFARLEAEHDGADELPDEVD 207
             ++AL+ ++       D  D + DE D
Sbjct: 336 QRLDALREQY-------DTYDSVCDESD 356


>PSLT068 [K] COG1475 Predicted transcriptional regulators Sty Salmonella
           typhimurium LT2
          Length = 665

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 11/196 (5%)

Query: 20  VKQRLRLASVSPALLDIYAEDGMSLEQLMAFTVTADHGRQEQVWQA-ISGSWQKEP--YQ 76
           V++ L+LA ++P +L+  A D ++ E   A  +  +  RQ QV++A     W  +P    
Sbjct: 173 VQRMLKLAGLAPVILEALAADKITTEHCQALALEDNPDRQVQVYEAACREGWNNKPEVRV 232

Query: 77  IRRMLTE-KTARASDRRAVFVGLDAYEAAGGVVLRDLFQSDDGGWLEDVALLDRLVTEKL 135
           IR ++T+ + +  ++ +  FVG  A+  +G  +  DLF  + GG+++ +A LD  + EKL
Sbjct: 233 IRNLITDSQVSTLNNSKYTFVGEKAF--SGDEIRADLFSDEQGGFVDKLA-LDTALLEKL 289

Query: 136 KAEAETIA-AEGWKWIEVAID--FPYGH-TRGLRELDSVSAGLTAEEQATIEALKAEFAR 191
           +  AE +  AEGW W    ++    YG  T   R  D   A  T +EQ  ++ L+  +  
Sbjct: 290 QWVAECLKEAEGWAWCAGRMEPVSRYGEDTEVYRIQDEPDAVYTEQEQQRLDELQELYDE 349

Query: 192 LEAEHDGADELPDEVD 207
            +   D  D +  E++
Sbjct: 350 NQTASDETDTMESEIE 365