BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0140.0027.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2143 Non COG 171 3e-42 PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 169 6e-42 RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 163 5e-40 PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 155 1e-37 SMa1625 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 147 2e-35 >CC2143 Non COG Length = 290 Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 113/287 (39%), Positives = 161/287 (56%), Gaps = 12/287 (4%) Query: 8 LNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARMELTPRAQ 67 L+LLVA D +L N++ A RL LSQPA S L RLR+ DPLLVR RM TPRA+ Sbjct: 11 LDLLVAADVILECENLTLAGERLGLSQPAVSRTLGRLREAFDDPLLVRVAGRMRATPRAE 70 Query: 68 ALRSPLANALDQVRALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVTLIAPNVTI 127 ALR+PLA L Q + L+ FD A + R FR ++PD+ +++P L+ ++ + AP + Sbjct: 71 ALRAPLAALLRQAQDLYAQASFDPATATRVFRAVIPDVVAAVILPDLLVRLAMAAPGCRL 130 Query: 128 DVVPWRGPAIFTPEFARTIDLVISIG-DSFKGFHRQRLYTDSDALAVRRGHGVGTKLKKR 186 ++ PWR + E R +DLVI+ ++F + LY D D LA G Sbjct: 131 ELSPWRPQS----EQPRDLDLVITTEVEAFPNYRMTPLYQDHDVLAFSGEAPSGD----- 181 Query: 187 EAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTARTDLVAFVPRR 246 L +HVAVI G D +D WL +G RRIA+VVP Y+ AL + R D VA +P R Sbjct: 182 --LLDLKHVAVIGAGAARDPVDRWLAEQGRARRIAVVVPHYLLALQLVVRGDHVAVLPSR 239 Query: 247 LISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLIL 293 +++AL L + V P D+Q + +P + D G++WLR+ +L Sbjct: 240 MVAALGAPLGVRCVELPTPQEPDQQWIMHPPQLDADAGNVWLREQVL 286 >PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 5/299 (1%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 MN+ + DLNLL LDALLRE NVSRAA RL LSQPA S+AL RLR+L+ DPLLVR G M Sbjct: 1 MNIQTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRLRELLDDPLLVRAGRAM 60 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 + TPRA AL +P+ AL Q+ ++L + FD RS + F + + D + MP LM +++ Sbjct: 61 QPTPRALALEAPIRAALRQIEQSLGDGEGFDPGRSRQRFTVAVTDYVELICMPALMRRLS 120 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFAR-TIDLVISIGDSFKG-FHRQRLYTDSDALAVRRGH 177 AP ++I + P + + +DLV+ ++ F R+ +++ L RR H Sbjct: 121 ERAPGISI-AIQHLTPTLPAEALDKGELDLVLGRFENVPARFQRRHWASETLQLVARRQH 179 Query: 178 GVGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTART 237 + + FL +H+ V GQ + ++D WL ++G++R++A P Y++A H+ A + Sbjct: 180 PLLAQAPDLATFLELQHLWV-HGGQTKGMVDQWLGSQGLKRQVAYTTPNYLQAAHIAAYS 238 Query: 238 DLVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLILETG 296 DLV +PR+L + L L + P D G + + + + D WL + I + G Sbjct: 239 DLVGVLPRQLAHYFERLLPLQSFDLPFDLGPFHLELVFLAQRERDIALQWLVEQIRQVG 297 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 151/297 (50%), Gaps = 2/297 (0%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 M L +DLNLLV + LLR+ VS A L ++QPA S+AL RLR L+GD L VR M Sbjct: 1 MELQDIDLNLLVVFNELLRQRRVSAVAETLGITQPAISNALNRLRKLLGDELFVRTSKGM 60 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 TP A+ L P+A AL + +L + F+ A S R F + M D+ +P LM ++ Sbjct: 61 IPTPFAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLA 120 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFARTIDLVISIGDSFK-GFHRQRLYTDSDALAVRRGHG 178 AP VT+ V + A +DL I K GF ++RL+ R+GH Sbjct: 121 RDAPGVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDLKSGFFQRRLFRQRYVCLFRKGHP 180 Query: 179 VGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTARTD 238 + + E FL A HV+++ G ++D + G+ RR++L VP +I H+ TD Sbjct: 181 LAKRGMTMEGFLEAEHVSIVAEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTD 240 Query: 239 LVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLILET 295 L+A VP+ + K L T P+ ++ + R +PG+ WLR+L+ ET Sbjct: 241 LIAVVPQAYATRTLKPFGLDTAACPVKIPDITINVLWHARNHREPGNQWLRQLLFET 297 >PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 304 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 162/306 (52%), Gaps = 15/306 (4%) Query: 2 NLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARME 61 +L +DLNLLV LDALL E +VSRAA RL +SQPA SHAL RLR+L GDPLLVR +RM+ Sbjct: 6 DLRRIDLNLLVVLDALLSERHVSRAAQRLAMSQPAVSHALGRLRELFGDPLLVRVKSRMQ 65 Query: 62 LTPRAQALRSPLANALDQVRALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVTLI 121 LT A L L +LDQVR + F+ RS RHFRL M D +++P L+ + + Sbjct: 66 LTSLALELAPKLQASLDQVRGVIGGPTFEPVRSRRHFRLGMSDYGAWVVLPALLRQQQAL 125 Query: 122 APNVTIDVVPWRGPAIFTPEFARTIDLVISIGDSF----KGFHRQRLYTDSDALAVRRG- 176 AP V+ +V + P + T L ++G F +G +RL+ + RR Sbjct: 126 APGVSFGIV--QEPRLETARQVAEGQLDCALG-VFPLLPEGVRARRLFEERFVCVCRRSL 182 Query: 177 --HGVGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVT 234 G L + +LAARHV V ++ + +D+ L +G+ R++AL +P + A + Sbjct: 183 FDRPDGLSLDR---YLAARHVRVSLQDNPAEEVDSALEKRGLRRQVALTLPHFTVAPALL 239 Query: 235 ARTDLVAFVPRRLISALSKQLSLMTVTPPLD-PGIDEQHMFYPTRAQMDPGSLWLRKLIL 293 A TDLV + R + L L PPL P D ++ A+ + WLR+ I Sbjct: 240 AGTDLVLTIAERTLERLRLPEELALCEPPLAIPRFDYVQIWRGD-AEREAAGAWLREQIQ 298 Query: 294 ETGREL 299 R++ Sbjct: 299 AAARKI 304 >SMa1625 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 307 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 157/294 (53%), Gaps = 4/294 (1%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 ++L+ DLNLLV + +L E NV RAA RLNLS A SH L RLR L+ DPL ++ + Sbjct: 5 IDLSRADLNLLVLYEMVLEERNVGRAAERLNLSASAVSHGLGRLRRLLNDPLFLKTPKGV 64 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 T RA+AL +P+A+ L +V R + ++ FD A + R F + D + +PPL++++ Sbjct: 65 VPTERARALAAPIADILARVRRVISTAEPFDPAHTRRRFTIGTAD-GFSVFLPPLLDEIA 123 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFARTIDLVISIGDSFKG-FHRQRLYTDSDALAVRRGHG 178 AP + I V + + + R ID+ ++ F QRLY + +A R GH Sbjct: 124 RKAPGIDIVVRHMQMESALSDLDERLIDVAVAPFYELPARFAAQRLYEEEFVVAARIGHP 183 Query: 179 VGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTARTD 238 K E + +H+ V RG L+D L ++ + RR+AL VP ++ AL + +T+ Sbjct: 184 F-LKNPTLENYCRMQHLLVAPRGDPRGLVDQLLESRNLARRVALAVPNFMLALDLIVKTE 242 Query: 239 LVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLI 292 LV+ +P+R I +++ ++ T P D I P A MD G WL +++ Sbjct: 243 LVSVLPKRFIEMHAERFAVATARLPFDLAISSIQAVTPKAALMDAGLAWLLQVL 296