BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0004.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr2161 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti 160 2e-39 XF0764 [R] COG0730 Predicted permeases Xfa Xylella fastidiosa 9a5c 150 3e-36 Ta0586 [R] COG0730 Predicted permeases Tac Thermoplasma acidophilum 140 2e-33 TVN0644 [R] COG0730 Predicted permeases Tvo Thermoplasma volcanium 131 2e-30 CC2862 Non COG 126 4e-29 >mlr2161 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti Length = 260 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/246 (55%), Positives = 170/246 (69%) Query: 12 LASGMLVGFSLGLVGGGGSILAVPLMVYVVGVPEPHVAIGTSAIAVAANAAVNLSNHARG 71 L SG LVGF+LGLVGGGGSILA PL++YVVGV +PH+AIGT A+AVAANA N +HA Sbjct: 9 LGSGGLVGFTLGLVGGGGSILATPLLLYVVGVAQPHIAIGTGALAVAANAFANFGSHALK 68 Query: 72 GTVIWSCALVFALSGMLGAFGGSILGKMLEGQKLLALFSLVMLVIAGLMLKSRARVGLTD 131 G V W CALVFA G +GA GS LGK ++G LL LF L+MLV+ GLM+ R T Sbjct: 69 GHVWWRCALVFAALGSVGALAGSTLGKSIDGAHLLFLFGLLMLVVGGLMVLPRRSTSTTA 128 Query: 132 VKISMSNMPAIIGLGLATGTMSGFFGIGGGFLIVPALMLATGMPIMNAVSSSLVAVTAFG 191 + + + G SGFFGIGGGFLIVP L+LATGMP +NA+ +SL+AV AFG Sbjct: 129 RPVDARMCAMTAAVAIVAGAASGFFGIGGGFLIVPGLILATGMPTINAIGTSLLAVAAFG 188 Query: 192 MTTALSYAWSGLVSWGLAGLFVAGGIAGGLLGTRSARHLSERRGALNIVFATVIIVVAIY 251 + TA +YA SG+V W LAG F+ GGI GGL+G +A L+ + LN +FA +I VVA Y Sbjct: 189 LATAFNYALSGMVEWQLAGEFIVGGIGGGLIGMLAATRLASYKNVLNRIFAALIFVVAGY 248 Query: 252 MLLRNI 257 +L R+I Sbjct: 249 VLYRSI 254 >XF0764 [R] COG0730 Predicted permeases Xfa Xylella fastidiosa 9a5c Length = 264 Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 152/228 (66%), Gaps = 1/228 (0%) Query: 30 SILAVPLMVYVVGVPEPHVAIGTSAIAVAANAAVNLSNHARGGTVIWSCALVFALSGMLG 89 SILA PL++YVVGV PH+AIGTSA+AV+ANA NL HA G V W A++FAL G LG Sbjct: 31 SILATPLLLYVVGVTNPHIAIGTSAVAVSANAYANLIAHAWKGHVWWRSAVIFALVGTLG 90 Query: 90 AFGGSILGKMLEGQKLLALFSLVMLVIAGLMLKSRARVGLTDVKISMSNMP-AIIGLGLA 148 AF GS +G +++GQ+LL LF L+M ++ LML+ RA + ++ M + + Sbjct: 91 AFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRATAPHAEQHQTVLRMCMKTSAVAIL 150 Query: 149 TGTMSGFFGIGGGFLIVPALMLATGMPIMNAVSSSLVAVTAFGMTTALSYAWSGLVSWGL 208 TG SGFFGIGGGFLIVPAL+ AT MP +NA+ SSL+AV FG+ T L+YA LV W + Sbjct: 151 TGAASGFFGIGGGFLIVPALIFATRMPTINAIGSSLLAVGTFGLITTLNYARHDLVDWTI 210 Query: 209 AGLFVAGGIAGGLLGTRSARHLSERRGALNIVFATVIIVVAIYMLLRN 256 A F+ GGI GG LGT A S + LN VF ++I VAIY++ R+ Sbjct: 211 AMEFIVGGITGGGLGTLLATRFSASKHLLNRVFGLIVIAVAIYVIWRS 258 >Ta0586 [R] COG0730 Predicted permeases Tac Thermoplasma acidophilum Length = 269 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 33/275 (12%) Query: 7 QSMLGLASGMLVGFSLGLVGGGGSILAVPLMVYVVGVPEPHVAIGTSAIAVAANAAVNLS 66 Q + + SG++VGFSLGL+GGGGSILA+PL++Y VG+ PH+ IGT+A+AV NA +N+ Sbjct: 2 QYIFSIISGIIVGFSLGLIGGGGSILAIPLLIYFVGIKNPHLVIGTTALAVGINALINVY 61 Query: 67 NHARGGTVIWSCALVFALSGMLGAFGGSILGKMLEGQKLLALFSLVMLVIAGLMLKSRAR 126 +H R V +F + G+LG G+ LG + G KLL LFS +M+VI M ++ + Sbjct: 62 SHLRKKNVSLRTGAIFTVFGILGVLLGTTLGLITPGGKLLFLFSFLMIVIGAYMFITKCK 121 Query: 127 VGLTDVKISMSNMPAIIG-----------------------LGLATGTMSGFFGIGGGFL 163 + N AI G+ G SG+FGIGGGFL Sbjct: 122 --------TCKNYDAIPKKNNNDDPPDPPKKGLWQKIKLEVFGVLAGFASGYFGIGGGFL 173 Query: 164 IVPALMLATGMPIMNAVSSSLVAVTAFGMTTALSYAWSGLVSWGLAGLFVAGGIAGGLLG 223 IVPAL+ + + + AV +SL++V FG+ TAL Y +G V +A L+V GGI GG G Sbjct: 174 IVPALLYSADITMNLAVGTSLMSVGTFGLVTALRYGIAGKVLVTIALLYVLGGIFGGYAG 233 Query: 224 TRSARHLSERRGALNIVFATVIIVVAIYMLLRNID 258 + + S +R L F+ +IIVV IYM + + Sbjct: 234 AKLSS--SMKRSTLRRFFSLIIIVVGIYMAIESFS 266 >TVN0644 [R] COG0730 Predicted permeases Tvo Thermoplasma volcanium Length = 278 Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/269 (40%), Positives = 155/269 (57%), Gaps = 23/269 (8%) Query: 4 TATQSMLGLASGMLVGFSLGLVGGGGSILAVPLMVYVVGVPEPHVAIGTSAIAVAANAAV 63 T Q + + SG+LVGFSLGL+GGGGSILA+PL++Y VG+ +PH+ IGT+A+AV NA + Sbjct: 4 TLLQYIYSIISGVLVGFSLGLIGGGGSILAIPLLIYFVGIRDPHLVIGTTALAVGINALI 63 Query: 64 NLSNHARGGTVIWSCALVFALSGMLGAFGGSILGKMLEGQKLLALFSLVMLVIAGLMLKS 123 N+ +H R V + F + G++G G+ LG + G +LL LFS +M+ I M + Sbjct: 64 NVYSHLRKKNVNFKIGTAFTVFGVIGVLIGTTLGLITPGGELLFLFSFLMIAIGLYMFLT 123 Query: 124 RAR--------------------VGLTDVKISMSNMPAIIGLGLATGTMSGFFGIGGGFL 163 + R V ++++ I GL G SG+FGIGGGFL Sbjct: 124 KCRTCKNFDALPKDDPPDPPDDPVHFSNIRKKFGQFKVYI-FGLLAGFASGYFGIGGGFL 182 Query: 164 IVPALMLATGMPIMNAVSSSLVAVTAFGMTTALSYAWSGLVSWGLAGLFVAGGIAGGLLG 223 IVPAL+ + + + AV +SL++V FG+ TAL Y +G V +A L+V GGI GG G Sbjct: 183 IVPALLYSADITMNIAVGTSLLSVGTFGLVTALRYGIAGEVLVPIALLYVLGGIFGGFAG 242 Query: 224 TRSARHLSERRGALNIVFATVIIVVAIYM 252 R + S +R L F+ +I+VV IYM Sbjct: 243 ARVST--SMKRSTLRRFFSIIIVVVGIYM 269 >CC2862 Non COG Length = 257 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 103/192 (53%), Positives = 127/192 (66%) Query: 14 SGMLVGFSLGLVGGGGSILAVPLMVYVVGVPEPHVAIGTSAIAVAANAAVNLSNHARGGT 73 SG LV L L GGGGS+LA PL++YVVGV +PHVAIGTSA AVA NAAV L A+ G Sbjct: 11 SGALVALLLTLFGGGGSVLATPLLLYVVGVRDPHVAIGTSAAAVAVNAAVGLLAQAKAGR 70 Query: 74 VIWSCALVFALSGMLGAFGGSILGKMLEGQKLLALFSLVMLVIAGLMLKSRARVGLTDVK 133 V W CAL F G++G+ G+ L K + GQ LL F+L M + M ++ G DV+ Sbjct: 71 VKWPCALTFGAPGLVGSLLGAHLAKAVNGQHLLVWFALAMAAVGLSMFRAPGSPGDPDVQ 130 Query: 134 ISMSNMPAIIGLGLATGTMSGFFGIGGGFLIVPALMLATGMPIMNAVSSSLVAVTAFGMT 193 I + ++ +G ATG +GFFGIGGGFLI P LM ATGM + NA +SSLV+VT FG Sbjct: 131 IDPAKAMRLVPVGAATGLAAGFFGIGGGFLIAPGLMAATGMTLANAAASSLVSVTMFGAA 190 Query: 194 TALSYAWSGLVS 205 T+LSYA SGLV Sbjct: 191 TSLSYAASGLVD 202