BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0009.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all7523 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC... 124 2e-28 SMc01668 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 108 8e-24 PA3034 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 104 1e-22 Rv3173c [K] COG1309 Transcriptional regulator Mtu Mycobacterium ... 100 3e-21 MT3262 [K] COG1309 Transcriptional regulator MtC Mycobacterium t... 100 3e-21 >all7523 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC 7120 Length = 190 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 105/183 (57%), Gaps = 10/183 (5%) Query: 11 KERILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAYLQR------R 64 +++ILETA LFY +GI+ +G++ + A G++KRTLY F SKD LIE ++ R Sbjct: 9 RQQILETASLLFYQKGIQHVGINEVIAASGVAKRTLYRWFSSKDQLIEEVMKYRAAQWLR 68 Query: 65 FVQPRPSDK--PPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPEDEDRTVRNIAIA 122 + + +D+ P E++LATFD L+ ++ DFRGCPF+NAV E+ D +++ Sbjct: 69 WFENAVADQGNTPKERLLATFDVLQGWYALPDFRGCPFINAVLEIA--DASHPAHQVSVQ 126 Query: 123 FKESRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMARAAREAARVLLA 182 +ES R + L Q GV D E + Q LL+ G+ + +P A+ AR A VL+ Sbjct: 127 LRESIRTYIMQLAEQAGVRDPESFSQQYLLLIGGASLMATIEGNPIGAQYARNALSVLID 186 Query: 183 NAG 185 +G Sbjct: 187 ASG 189 >SMc01668 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 198 Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/190 (37%), Positives = 98/190 (51%), Gaps = 14/190 (7%) Query: 1 MASPPPKQTMKERILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAY 60 M + P +ERI+ A +LFY +GIRA+GVD +A G++KRTLY HF SKD LI AY Sbjct: 1 MTTAP---NTRERIVSAASKLFYAEGIRAVGVDAVAEAAGVTKRTLYYHFKSKDDLIAAY 57 Query: 61 LQRRFVQPR---------PSDKPPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPED 111 L+ R QP ++ A ++ F +L R ++GC F+ AEL Sbjct: 58 LEGR-DQPNLKLFQKWFSEAEGGVASRVEGIFFNLARAARHPKWKGCGFLRTSAELASMP 116 Query: 112 EDRTVRNIAIAFKESRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMAR 171 +R I A K+ W R G+ +AE LA Q+ LL+DGS A L+ DP+ Sbjct: 117 GHPAIR-IGAAHKKKFEDWLRQAFEAEGIVEAEELARQVLLLLDGSFAVVLLHRDPSYME 175 Query: 172 AAREAARVLL 181 A AA L+ Sbjct: 176 TAGAAAASLV 185 >PA3034 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 185 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 97/184 (52%), Gaps = 12/184 (6%) Query: 11 KERILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAYLQRRFVQPRP 70 +E++L TA LFY +G A G+D I AE G++K TLY HF SKD LI A L+ R + R Sbjct: 6 REQLLSTAVDLFYREGYHATGIDRILAESGVAKMTLYKHFRSKDELIMAALEVR--RQRT 63 Query: 71 SDK--------PPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPEDEDRTVRNIAIA 122 +++ P ILA FD L+ + FRGC F++A AE + + A Sbjct: 64 AERMLEAEARLQPRAAILAVFDGLQEFLQDEAFRGCAFIHAAAEF--HERSHPIHRQAAE 121 Query: 123 FKESRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMARAAREAARVLLA 182 K +F+ L +LGV A LA QL L++G++ + AR AR+AA LL Sbjct: 122 QKAFVEAYFQRQLERLGVRSAALLARQLQYLMEGALVMAHIHGPADQAREARQAAESLLQ 181 Query: 183 NAGI 186 AGI Sbjct: 182 VAGI 185 >Rv3173c [K] COG1309 Transcriptional regulator Mtu Mycobacterium tuberculosis H37Rv Length = 200 Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 14 ILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAYLQRRFVQ------ 67 IL+ A LFY +GI A GV+ IA + +SKRTLY HFPSK AL+E YL R Q Sbjct: 22 ILKAAAELFYCEGINATGVELIANKASVSKRTLYQHFPSKSALVEEYL-RGLRQAAGEAD 80 Query: 68 --PRPSDKPPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPEDEDRTVRNIAIAFKE 125 P+ S+ P E++LA FD R RGCPF NA E E V I + K Sbjct: 81 KMPKASNATPRERLLALFDRPNR--GDGRMRGCPFHNAAVEAA--GEMPGVERIVHSHKR 136 Query: 126 SRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMARAAREAARVLLANA 184 L R+ G A L QL +L +G+ A DD AR AA VL+ A Sbjct: 137 DYIKGLARLAREAGAAHPRSLGNQLAVLFEGAAALSTSLDDAGPWAHARAAAEVLIDQA 195 >MT3262 [K] COG1309 Transcriptional regulator MtC Mycobacterium tuberculosis CDC1551 Length = 200 Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 14 ILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAYLQRRFVQ------ 67 IL+ A LFY +GI A GV+ IA + +SKRTLY HFPSK AL+E YL R Q Sbjct: 22 ILKAAAELFYCEGINATGVELIANKASVSKRTLYQHFPSKSALVEEYL-RGLRQAAGEAD 80 Query: 68 --PRPSDKPPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPEDEDRTVRNIAIAFKE 125 P+ S+ P E++LA FD R RGCPF NA E E V I + K Sbjct: 81 KMPKASNATPRERLLALFDRPNR--GDGRMRGCPFHNAAVEAA--GEMPGVERIVHSHKR 136 Query: 126 SRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMARAAREAARVLLANA 184 L R+ G A L QL +L +G+ A DD AR AA VL+ A Sbjct: 137 DYIKGLARLAREAGAAHPRSLGNQLAVLFEGAAALSTSLDDAGPWAHARAAAEVLIDQA 195