BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0007.p (279 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DRA0218 [V] COG1680 Beta-lactamase class C and other penicillin ... 157 2e-38 CC3190 [V] COG1680 Beta-lactamase class C and other penicillin b... 157 3e-38 CC3628 [V] COG1680 Beta-lactamase class C and other penicillin b... 144 1e-34 CC1568 [V] COG1680 Beta-lactamase class C and other penicillin b... 144 2e-34 CC1567 [V] COG1680 Beta-lactamase class C and other penicillin b... 140 2e-33 >DRA0218 [V] COG1680 Beta-lactamase class C and other penicillin binding proteins Dra Deinococcus radiodurans Length = 294 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 122/208 (58%), Gaps = 6/208 (2%) Query: 21 QRYIDNDLLSGISWTVLVGRDIADTGCVGWADKEAQIPLRTDHIFRVFSNTKLITSCAAL 80 Q Y+D+ LL V ++A +G+AD A+ PLR DH+FR++S TK +TS A L Sbjct: 21 QTYLDSGLLPNAQTLVYRRGELAYQSVLGFADMGARTPLREDHLFRIYSMTKPLTSLACL 80 Query: 81 LLVEEGRFRLDDPIEALIPQLRNRKVLRPGATSIDDTEPAQRSITVRHLLSHSAGLSYGL 140 +LVEEGR L DP+ A IP V A T P Q V LL H+AGLSY + Sbjct: 81 MLVEEGRLSLKDPVSAFIPAWAELNVHAGDAPPTAPTRPMQ----VVDLLRHTAGLSYHI 136 Query: 141 FDPGTPIFKAYNERKILNPMTTLADMVDGLSDLPLVFHPGSSWEYSVAIDVVARLVEVVS 200 GT Y ER+ L TTLAD V G+++LPL + PG +W YS A DV+ +V+ V+ Sbjct: 137 -QQGTATDALYRERR-LGFGTTLADFVAGIAELPLEYSPGEAWLYSAATDVLGYVVQQVA 194 Query: 201 GQPFDKFVKARILEPLGMVDTGFHVPEK 228 G PF++F+K RIL PL M DT F VP + Sbjct: 195 GVPFEQFLKERILTPLDMHDTDFQVPPE 222 >CC3190 [V] COG1680 Beta-lactamase class C and other penicillin binding proteins Ccr Caulobacter vibrioides Length = 490 Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 126/239 (52%), Gaps = 3/239 (1%) Query: 22 RYIDNDLLSGISWTVLVGRDIADTGCVGWADKEAQIPLRTDHIFRVFSNTKLITSCAALL 81 +YID L V +A T +G AD E PL+ D +FR++S TK ITS A ++ Sbjct: 106 KYIDTGKLPCALTQVWRRGQLAHTSVLGSADVERGKPLKADSLFRIYSMTKPITSVAFMM 165 Query: 82 LVEEGRFRLDDPIEALIPQLRNRKVLRPGATSIDDTEPAQRSITVRHLLSHSAGLSYGLF 141 LVEEG LDDP+ IP R+ V + G T + + LL H++GL+YG F Sbjct: 166 LVEEGLASLDDPVHRFIPAWRDIGVFQAGVAGAFQTTRTKEPMRTIDLLRHTSGLTYG-F 224 Query: 142 DPGTPIFKAYNERKI--LNPMTTLADMVDGLSDLPLVFHPGSSWEYSVAIDVVARLVEVV 199 T + AY + K+ ++ L V+ L +PL F PG +W YSVA DV+ LVEV+ Sbjct: 225 QQRTNVDAAYRKLKLDGVDSEGGLKTFVETLGTVPLEFSPGEAWNYSVATDVLGYLVEVI 284 Query: 200 SGQPFDKFVKARILEPLGMVDTGFHVPEKDHXARRLLRRRRPDGSDEARADAHRQRALS 258 SG PFD F+K RI +PL MVDTGF VPE P G + D + R LS Sbjct: 285 SGMPFDVFLKTRIFDPLKMVDTGFFVPEGQRERFTACYALTPSGKVVLQDDPEKSRYLS 343 >CC3628 [V] COG1680 Beta-lactamase class C and other penicillin binding proteins Ccr Caulobacter vibrioides Length = 479 Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/261 (37%), Positives = 135/261 (51%), Gaps = 11/261 (4%) Query: 12 DFAPARAAMQRYIDNDLLSGISWTVLVGRDIADTGCVGWADKEAQIPLRTDHIFRVFSNT 71 D A AA++ +D+ +G+S V G G G AD+EA P+ + ++FS T Sbjct: 93 DKARINAALKAMVDSGRAAGVSALVWQGGQERYFGVAGMADREAGKPMDRSALVQIFSMT 152 Query: 72 KLITSCAALLLVEEGRFRLDDPIEALIPQLRNRKVLRPGATSIDDTEPAQRSITVRHLLS 131 K +T A + L E+G+F LDDP+ +P+ + KV + PA R I VR +L Sbjct: 153 KPVTGVALMQLWEQGKFGLDDPLARYLPEFADMKV----SDGQGGVRPAARPILVRDILR 208 Query: 132 HSAGLSYGLFDPGTPIFKAYNERKILNPMTTLADMVDGLSDLPLVFHPGSSWEYSVAIDV 191 H+AG SYG + P A+ LN LA+ L+ PL++ PG W YS A+DV Sbjct: 209 HTAGFSYGWGE--GPADAAFRAADPLNLNNDLAEFGRRLATAPLLYDPGERWSYSAAVDV 266 Query: 192 VARLVEVVSGQPFDKFVKARILEPLGMVDTGFHVPEKDHXARRLLRRRRPDGSDEARADA 251 A LVE +SGQPF+ +VKA +LEPLGM T + PE RR DG AR D Sbjct: 267 QALLVERLSGQPFETYVKANVLEPLGMRTTAWTQPEAAFAGLAATYRRGADGK-LARQDD 325 Query: 252 HRQRALSW----RLSAPGAAL 268 R +++ RL+ GA L Sbjct: 326 VVTRRMNFDPSRRLTMGGAGL 346 >CC1568 [V] COG1680 Beta-lactamase class C and other penicillin binding proteins Ccr Caulobacter vibrioides Length = 436 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 5/210 (2%) Query: 18 AAMQRYIDNDLLSGISWTVLVGRDIADTGCVGWADKEAQIPLRTDHIFRVFSNTKLITSC 77 A MQ +D L G++ T+LV V P+ D +FR++S TK +T Sbjct: 52 AHMQGLVDKGHLPGVT-TMLVRHGKVVNFQVHGKKGFDGPPMTKDTVFRIYSQTKPVTGV 110 Query: 78 AALLLVEEGRFRLDDPIEALIPQLRNRKVLRP-GATSIDDTEPAQRSITVRHLLSHSAGL 136 A ++L EEG++ LDDP+ IP+ N +VL+ A DT PA+R T+R L+SHSAG Sbjct: 111 AMMILFEEGKWTLDDPVSKFIPEFANLRVLKGVNADGSFDTVPAERPPTMRELMSHSAGF 170 Query: 137 SYGLFDPGTPIFKAYNERKILNPMTTLADMVDGLSDLPLVFHPGSSWEYSVAIDVVARLV 196 +YGL P P+ KAY + K+L + AD V ++++PLV PG W+YS+A+D+ +V Sbjct: 171 AYGL-TPDNPLDKAYAD-KVLGARSR-ADFVKAIAEIPLVDQPGKRWKYSIAVDIQGLIV 227 Query: 197 EVVSGQPFDKFVKARILEPLGMVDTGFHVP 226 E ++G F+K+RI +PL M DTGF +P Sbjct: 228 EKLTGLSLGDFMKSRIFDPLKMKDTGFWLP 257 >CC1567 [V] COG1680 Beta-lactamase class C and other penicillin binding proteins Ccr Caulobacter vibrioides Length = 490 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 11/179 (6%) Query: 58 PLRTDHIFRVFSNTKLITSCAALLLVEEGRFRLDDPIEALIPQLRNRKVLRPGATSIDDT 117 P+ D IFR+ S TK +T A ++L E+G +RLDDP+ IP+ N +V A +D+T Sbjct: 118 PMPMDAIFRIRSETKPVTGVAMMMLYEQGLWRLDDPVSLHIPEFANLRV----AKGVDET 173 Query: 118 -----EPAQRSITVRHLLSHSAGLSYGLF-DPGTPIFKAYNERKILNPMTTLADMVDGLS 171 P RS T+R L++H+AG +YGL DP +P +AY ++L +L D+V +S Sbjct: 174 GQPILTPVSRSPTMRELMTHTAGFAYGLANDPSSPADQAYYRAEVLQ-SASLTDLVQKVS 232 Query: 172 DLPLVFHPGSSWEYSVAIDVVARLVEVVSGQPFDKFVKARILEPLGMVDTGFHVPEKDH 230 LP+ PG W YSVA D+ +VE +SGQ F++ RI PLGM DT F+VPE+ Sbjct: 233 GLPMFAEPGQLWRYSVAADIQGYIVEKLSGQSLPVFMQERIFTPLGMKDTAFYVPEEKQ 291