BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0057.p (302 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 416 e-116 AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 396 e-110 AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 204 3e-52 AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 162 9e-40 SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 160 4e-39 >mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/300 (69%), Positives = 251/300 (83%), Gaps = 1/300 (0%) Query: 3 TLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRLSA 62 TLDVDAVK FV +A+L+SFTRAAE LG+TQGAISVKLKRLE ++G RLIERTPRLVRLSA Sbjct: 2 TLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSA 61 Query: 63 QGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPALTI 122 +GA FL PA+ELL AHDRA+A+L+ VR R F LGIATHVGGAEVPTLLARL+AHDPALTI Sbjct: 62 RGAVFLDPARELLAAHDRAVASLAAVR-RHFRLGIATHVGGAEVPTLLARLNAHDPALTI 120 Query: 123 EVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLRLA 182 EVRL+D+R+L+ AFDRG++DAAI+RREDDRRDGE+LA +H+GW+A PDFV+RAGEPLRLA Sbjct: 121 EVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLA 180 Query: 183 ASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTIEV 242 AS+PSC + ++ T L A GIPWT+ FLGCGSFAVA+AV+AGLA FS RL P GT+EV Sbjct: 181 ASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV 240 Query: 243 SRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREHHRMPASRAAEEIHTVTEVVGS 302 SR+ GLP LP SEIMLLS LSDA+SR L+T+ AFREH + + A+ +++V S Sbjct: 241 SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDS 300 >AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/287 (71%), Positives = 232/287 (80%), Gaps = 1/287 (0%) Query: 1 MTTLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRL 60 M+TLDV+AV+ FVTIADL+SFTRAAETLGTTQGAISVKLKRLE +LG RL+ERTPR VRL Sbjct: 4 MSTLDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRL 63 Query: 61 SAQGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPAL 120 SAQGA FLAPA+E L AHDRA+A LS R RRF LGIA HV G EVPTLLARL+ HDP L Sbjct: 64 SAQGAVFLAPAREFLAAHDRALAGLSSPR-RRFGLGIAAHVAGPEVPTLLARLNDHDPGL 122 Query: 121 TIEVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLR 180 TIEVR++ SR LLDAFDRGEIDAAIIRREDDRRDGE+L +H+GW+A P F HR GEPLR Sbjct: 123 TIEVRMDHSRSLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLR 182 Query: 181 LAASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTI 240 LAA SP+CGV NIAT AL AA I WTE FLG S V AV+AGLA S FS RLAP GT+ Sbjct: 183 LAALSPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTV 242 Query: 241 EVSRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREHHRMPAS 287 EVS+R GLP LP SEI++ S L+D++SR L+T+ AFREH P S Sbjct: 243 EVSQRFGLPPLPSSEIIMFSTLTDSRSREALRTLAAAFREHRPGPIS 289 >AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 113/280 (40%), Positives = 173/280 (61%), Gaps = 3/280 (1%) Query: 1 MTTLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRL 60 M +LD +AV+ F+ +A+L+SFT+ A + T+Q AIS++L+RLE LGHRL+ERTPR VRL Sbjct: 4 MRSLDPEAVEAFLLVAELQSFTQVAGVMNTSQAAISLRLRRLEDMLGHRLVERTPRRVRL 63 Query: 61 SAQGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPAL 120 +A G FL PA+ + A RA+ P R ++G+ H+ GA++P +L + ++ Sbjct: 64 TAAGERFLEPARAYVAAGRRALDVFGQ-EPTRLAIGVTHHLIGADLPRILRVVSERVTSV 122 Query: 121 TIEVRLEDSRDLLDAFDRGEIDAAIIRREDD-RRDGEMLATDHYGWFAMPDFVHRAGEPL 179 T+ +R +R LL+ +D GE+DA ++ R DD RRDGE L + +GW+ DF R+ P+ Sbjct: 123 TLHLRTAGTRTLLELYDAGELDAIVVLRHDDIRRDGEPLFQESFGWYGSADFDLRSDVPV 182 Query: 180 RLAASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGT 239 L C + +A RAL +A I W E F+G G+ AV AV AG+ + ++ APA Sbjct: 183 PLVLQPEPCNLRAMALRALESADIAWREVFVGTGATAVGAAVEAGIGVGLLAQSAAPASV 242 Query: 240 IEVSRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFR 279 +V R LP LP +++++S ++ + AVL+ I GAFR Sbjct: 243 RQVRSR-SLPELPKLDVVMISTVTGDHANAVLRRITGAFR 281 >AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 102/258 (39%), Positives = 145/258 (56%), Gaps = 3/258 (1%) Query: 4 LDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRLSAQ 63 +D+++V+ F+ +L S TRAAE GT Q +S KLK LE++LG RLI+R+PR +RL+ Sbjct: 2 IDLESVRLFILSVELGSLTRAAEAAGTVQPVVSQKLKMLEQRLGRRLIDRSPRHLRLTED 61 Query: 64 GAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPA-LTI 122 G FL A+ELL H+ A+ S P F+L + H G+ + + + A PA I Sbjct: 62 GQVFLPKARELLAKHEDAL-NFSDEPPLHFALAASDHAIGSRLSAAIRAMRASLPANAVI 120 Query: 123 EVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLRLA 182 +V L SR + ++F G DAAIIRR DGE+L TD GW PD+ RA + L Sbjct: 121 DVTLGFSRQVKESFASGLADAAIIRRNGGGSDGEVLRTDRLGWRVAPDWRPRANSAVPLV 180 Query: 183 ASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTIEV 242 + P CGV +IA L AG+ W ++F A+ + V AG + ++ G + Sbjct: 181 SLGPGCGVRDIAISELGKAGVVWRDAFTAGSCSALLEGVHAGAGIAALG-DISARGLPDR 239 Query: 243 SRRLGLPALPPSEIMLLS 260 LGLP LPPS+I+LLS Sbjct: 240 GAELGLPPLPPSDIVLLS 257 >SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 211 Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 126 LEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLRLAASS 185 +++SR LLDA++ G +DA I+R +DDRRDGE+L +H+GWFA DF H GEPLR+A+ Sbjct: 2 VDNSRALLDAYEDGTLDAVIVRSDDDRRDGEVLGPEHFGWFASSDFEHHTGEPLRIASHP 61 Query: 186 PSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTIEVSRR 245 C V +ATR L AA I WTE F+G G+ AV A++AGLA + F RLA A IEVS+ Sbjct: 62 SCCTVREVATRLLDAASIRWTEVFVG-GTSAVTAALSAGLAVAAFPCRLATADMIEVSQM 120 Query: 246 LGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREHHR 283 L LP++P I+L S+L+D K+R L+ I AF EH R Sbjct: 121 LNLPSIPSLSIVLHSSLTDPKTRETLRAITAAFSEHRR 158