BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0036.p (1112 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 564 e-160 DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 428 e-119 all4900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 390 e-107 CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 382 e-105 CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 369 e-101 >PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Pae Pseudomonas aeruginosa Length = 663 Score = 564 bits (1453), Expect = e-160, Method: Compositional matrix adjust. Identities = 315/647 (48%), Positives = 404/647 (62%), Gaps = 8/647 (1%) Query: 472 WLDFLNVEAAGLQAAGFEIRIDDDFPYRLATSSGVFDADFESSGIDWFELALGIEIDGER 531 WL F+ + L+ G+ I I DF Y L + E+ WFEL LGI++ G+R Sbjct: 10 WLHFMQDDLPRLRQQGWFIDIRADFAYDLTPIDAWYAEVEEADDRQWFELELGIQVAGQR 69 Query: 532 RDLAPLLAALL--SQPGFSPETVKQLADDGDSVY-LPLADGRYLAVAADRFLPIVLALHT 588 L P L L+ S P + + AD+ V L L +A+ R P++ AL Sbjct: 70 VSLLPALTELIRRSPALLDPRALARHADEEQLVLRLELNPPLRVALPFGRLKPVLAALSD 129 Query: 589 LGEAFVDRSGKIRLSRAQTVPLLGLEADHFVFRGAENLRRMAGLLSARGLPCPVLPSDFN 648 + K+RL L L+ + G +NLR A L + P Sbjct: 130 FYLGDPEPQRKLRLGAPDAARLADLDELPLAWEGGDNLRDFARRLRSFQARPATPPQGLR 189 Query: 649 AALRPYQTQGVAWLDLLRESGLGGVLADDMGLGKTVQILALLALEKARGHLTDPAIVIAP 708 A LRPYQ +G++W+ LRE GGVLADDMGLGKT+Q LA + LEK G L PA+V+ P Sbjct: 190 AELRPYQLEGLSWMQTLRELDSGGVLADDMGLGKTLQSLAHVLLEKQAGRLDTPALVVMP 249 Query: 709 TSLMTNWFNEARKFTPGLRVLVLHGPDRRQSFEAIADHDLVLTTYPLIARDHEVLLAREW 768 TSL+ NW +EA +F P LRVL LHG RR+ F I +HDLVLTTY L+ RD L R + Sbjct: 250 TSLIPNWLDEAERFAPDLRVLALHGAGRRRDFARIDEHDLVLTTYALLPRDAAELGKRRF 309 Query: 769 HVAVLDEAQTIKNSNTATTRRLQGIRARHRFCLTGTPMENHLGELWSIMSFANPGYLGDR 828 H+ +LDEAQ IKN+ T + + ARHR CLTGTP+ENHLGELWS+ F PG+LGD Sbjct: 310 HLLILDEAQNIKNATTKAAVAARELAARHRLCLTGTPLENHLGELWSLFHFLMPGWLGDA 369 Query: 829 ATFVRDWRTPIEKRADLGRARVLTHRIKPFLLRRTKQEVAAELPPKSEFTEGVVLEGSQR 888 F +D+RTPIEK D R L R++PFLLRRTK++VA+ELPPKSEFT+ V L +QR Sbjct: 370 RQFAQDYRTPIEKHGDEARLSHLAARLRPFLLRRTKEQVASELPPKSEFTQFVELSEAQR 429 Query: 889 ELYDAIRLSTSEKVRKAIRERGLAKSHIVVLEALLRMRQACCDPALLNLGDGVQR----- 943 ELY+ +RL+ KVR+ I RGLA+S IV+LEALL++RQ CCD LL + R Sbjct: 430 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 489 Query: 944 PSAKLDRLMEMVEELLSEKRKIIVFSQFTSMLALIRKRCDALAIRYSVLTGETKDRRSAI 1003 S KL L++M++EL++E R++++FSQFTSMLALI + Y +LTGET+DRR+ + Sbjct: 490 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 549 Query: 1004 DGFQNGASDLFLISLKAGGVGLNLTAADTVIIFDPWWNPAVEEQAIDRAHRIGQDKAVFV 1063 FQ+G +FLISLKAGGVGLNLTAADTVI +DPWWNPAVE QA DRA+RIGQDK VFV Sbjct: 550 QRFQSGKVPVFLISLKAGGVGLNLTAADTVIHYDPWWNPAVENQASDRAYRIGQDKPVFV 609 Query: 1064 YRLVAAGTIEEKMDELKARKRALADSIFDSQGRIGAALTEEDVQKLF 1110 YRL+A GT+EEK+ L+ K ALAD +F G L E D+ LF Sbjct: 610 YRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDGWKLDEADIDALF 656 >DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Dra Deinococcus radiodurans Length = 600 Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/430 (51%), Positives = 299/430 (69%), Gaps = 1/430 (0%) Query: 682 KTVQILALLALEKARGHLTDPAIVIAPTSLMTNWFNEARKFTPGLRVLVLHGPDRRQSFE 741 T+Q LA L EK G P++VIAPTS++ NW EA +FTP L+VLVLHG DR FE Sbjct: 157 NTLQTLAHLLKEKEEGRADRPSLVIAPTSVIGNWQAEAARFTPDLKVLVLHGKDRHADFE 216 Query: 742 AIADHDLVLTTYPLIARDHEVLLAREWHVAVLDEAQTIKNSNTATTRRLQGIRARHRFCL 801 I D+VLTTYPL+ RD + L E+H+ +LDEAQ IKN+ TA + + ARHR L Sbjct: 217 KIPHADVVLTTYPLLPRDIDELRQHEYHLVILDEAQNIKNNKTAAAKAAGSLGARHRLAL 276 Query: 802 TGTPMENHLGELWSIMSFANPGYLGDRATFVRDWRTPIEKRADLGRARVLTHRIKPFLLR 861 TGTP+ENHLGELWS +F PG L D TF + +RTPIEKR D R L+ R++PF+LR Sbjct: 277 TGTPLENHLGELWSQFNFLAPGLLHDEKTFQKLYRTPIEKRGDTARQAALSARVRPFILR 336 Query: 862 RTKQEVAAELPPKSEFTEGVVLEGSQRELYDAIRLSTSEKVRKAIRERGLAKSHIVVLEA 921 R K++VA ELPPK+E V LEG QR+LY+ +R++ +VR+ + RGLA+S I +L+A Sbjct: 337 REKRDVARELPPKTEIPVRVTLEGDQRDLYETVRVTMQSRVREELAARGLARSTIAILDA 396 Query: 922 LLRMRQACCDPALLNLGDGVQ-RPSAKLDRLMEMVEELLSEKRKIIVFSQFTSMLALIRK 980 LL++RQA DP L+ L + + +AKLD L + +++ E R++++FS F ++L + + Sbjct: 397 LLKLRQAVTDPRLVKLEAAREVQGNAKLDWLETNLPQMVEEGRRVLIFSGFATLLGHLEE 456 Query: 981 RCDALAIRYSVLTGETKDRRSAIDGFQNGASDLFLISLKAGGVGLNLTAADTVIIFDPWW 1040 I YS +TG+TKDR+ ID FQ G + +FLI+LKAGGVGLNLTAADTVI +DPWW Sbjct: 457 FLKREGIPYSKITGQTKDRQKQIDAFQAGETHVFLITLKAGGVGLNLTAADTVIHYDPWW 516 Query: 1041 NPAVEEQAIDRAHRIGQDKAVFVYRLVAAGTIEEKMDELKARKRALADSIFDSQGRIGAA 1100 NPA E+QA DRA+RIGQDK VFVY+L+AAG++EE++ +L+ARK ALA + D Sbjct: 517 NPAAEDQATDRAYRIGQDKPVFVYKLIAAGSVEERILDLQARKAALARGVLDGGLTDATQ 576 Query: 1101 LTEEDVQKLF 1110 LT +D+ +LF Sbjct: 577 LTVQDLDRLF 586 >all4900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Nos Nostoc sp. PCC 7120 Length = 869 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/616 (38%), Positives = 332/616 (53%), Gaps = 72/616 (11%) Query: 517 DWFELALGIEIDGER-RDLAPLLAALLSQPGFSPETVKQLADDGDSVYLPLADGRYLAVA 575 DWF ++++ + D+ LLA L P S ++PL DG++LA+ Sbjct: 296 DWFAATGELKLNQDLVLDMQQLLALLEKTP---------------SRFIPLGDGQFLALT 340 Query: 576 AD-------------------RFLPIVLALHTLG-EAFVDRSGKIRLSRAQTVPLLGLEA 615 RF P L TLG E FVD GK++ + + Sbjct: 341 QAFRKRLDELRLFSEKHSKGIRFHP----LATLGLEDFVDEVGKVKTDKHWKTHI----- 391 Query: 616 DHFVFRGAENLRRMAGLLSARGLPCPVLPSDFNAALRPYQTQGVAWLDLLRESGLGGVLA 675 + L+ M L P LPS F A LR YQ G WL L G+G LA Sbjct: 392 --------QRLQEMKNLQ-------PELPSTFGAELRDYQMDGFCWLARLAHWGVGACLA 436 Query: 676 DDMGLGKTVQILALLALEKARGHLTDPAIVIAPTSLMTNWFNEARKFTPGLRVLVLHGPD 735 D MGLGKTVQ LA++ G P+++IAPTS+ NW +EA+KF P L ++ G + Sbjct: 437 DQMGLGKTVQALAVILRNAHEG----PSLIIAPTSVCMNWVSEAQKFAPTLNIIQFTGAN 492 Query: 736 RRQSFEAIADHDLVLTTYPLIARDH--EVLLAREWHVAVLDEAQTIKNSNTATTRRLQGI 793 R++ + + D+++ +Y L+ ++ ++L +W VLDEAQ IKN T ++ + Sbjct: 493 RQKLLDGLQPLDMLVCSYGLLQQEEVAQMLSGVQWQTIVLDEAQAIKNMTTKRSQAAMNL 552 Query: 794 RARHRFCLTGTPMENHLGELWSIMSFANPGYLGDRATFVRDWRTPIEKRADLGRARVLTH 853 +A + TGTP+ENHLGELW++ F NPG LG +F + + PIEK D L Sbjct: 553 KANFKLLTTGTPIENHLGELWNLFRFINPGLLGSFESFNQRFAIPIEKYQDKQARNKLKK 612 Query: 854 RIKPFLLRRTKQEVAAELPPKSEFTEGVVLEGSQRELYDAIRLSTSEKVRKAIRERGLAK 913 I+PFLLRRTK +V ELP ++E V L ++ Y+A+R K+ + E G Sbjct: 613 LIQPFLLRRTKNQVLEELPSRTEILLHVELSREEKAFYEALRRQAISKLSDSNAEAG--N 670 Query: 914 SHIVVLEALLRMRQACCDPALLNLGDGVQRPSAKLDRLMEMVEELLSEKRKIIVFSQFTS 973 H+ VL ++++R+ACC+P+L+ + D + S+KL E++ ELL + K +VFSQF Sbjct: 671 KHLQVLAEIMKLRRACCNPSLV-MPD-TELSSSKLQLFGEVLGELLENRHKALVFSQFVD 728 Query: 974 MLALIRKRCDALAIRYSVLTGETK--DRRSAIDGFQNGASDLFLISLKAGGVGLNLTAAD 1031 L +IR D I Y L G T +R+ +D FQ G D+FLISLKAGG GLNLTAAD Sbjct: 729 HLHIIRNYLDKQGINYQYLDGSTSVSERKKRVDAFQAGNGDVFLISLKAGGTGLNLTAAD 788 Query: 1032 TVIIFDPWWNPAVEEQAIDRAHRIGQDKAVFVYRLVAAGTIEEKMDELKARKRALADSIF 1091 VI DPWWNPAVE+QA DRAHRIGQ + V +YRLVA TIEEK+ EL KR LADS+ Sbjct: 789 YVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEEKIVELHHHKRDLADSLL 848 Query: 1092 DSQGRIGAALTEEDVQ 1107 + G TE +Q Sbjct: 849 EGADMSGKISTEALLQ 864 >CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cac Clostridium acetobutylicum Length = 1052 Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/654 (34%), Positives = 358/654 (54%), Gaps = 39/654 (5%) Query: 471 EWLDFLNVEAAGLQAAGFEIRIDDDFPYRLATSSGVFDADFESSGIDWFELALGIEIDG- 529 + ++F++V +Q+ G+EI ++ S ++ + + + E++ EIDG Sbjct: 423 KMVEFMSVGLDKIQSKGYEIYYSENIKKFKVYSPHMYKGSLKVNEGNMIEVSF--EIDGI 480 Query: 530 ERRDLAPLLAALLSQPGFSPETVKQLADDGDSVYLPLADG-RYLAVAADRFLPIVLALHT 588 + +L + AL + + ++ D + V +AD +Y+ + + L Sbjct: 481 DNSELYNIFEALRLKKKYYKLKEGEIVDLSNKVIKKIADMFKYMDLDYSKINQKPAILSK 540 Query: 589 LGEAFVDRSGKIRLSRAQTVPLLGLEADHFVFRGAEN-LRRMAGLLSARGLPCPV--LPS 645 A+++R ++ ++ +F + RM L ++GL +P+ Sbjct: 541 ENAAYINRY---------------IDEENLMFFDKDTRFERMVKL--SKGLENMKVGIPN 583 Query: 646 DFNAALRPYQTQGVAWLDLLRESGLGGVLADDMGLGKTVQILALLALEKARGHLTDPAIV 705 +FN+ +R YQ +G W L G+GG+LAD+MGLGKT+Q +A ++ GH + +I+ Sbjct: 584 EFNSIMRDYQKRGFRWFKSLDHFGVGGILADEMGLGKTLQTIAFIS--SGTGH-KETSII 640 Query: 706 IAPTSLMTNWFNEARKFTPGLRVLVLHGPDRRQSFEAIA---DHDLVLTTYPLIARDHEV 762 I PTS++ NW E KF+ L+ L++ G R ++ EAI ++D+++T+Y LI D E Sbjct: 641 IVPTSIVYNWKEEIEKFSKNLKTLIISGTKRERA-EAIGEYYNYDVLITSYSLIRMDIEE 699 Query: 763 LLAREWHVAVLDEAQTIKNSNTATTRRLQGIRARHRFCLTGTPMENHLGELWSIMSFANP 822 ++ +LDEAQ IKN N+ T+ ++ IRA++ F LTGTP+EN L ELWSI F P Sbjct: 700 YSKIKFKYCILDEAQYIKNKNSLITKAVKKIRAKNCFALTGTPIENCLSELWSIFDFIMP 759 Query: 823 GYLGDRATFVRDWRTPIEKRADLGRARVLTHRIKPFLLRRTKQEVAAELPPKSEFTEGVV 882 GYL + FV + PI K D L I+PF+LRR K+ V ELP K E + Sbjct: 760 GYLLSYSKFVNKYENPIIKEKDKRALYELNRHIEPFILRRLKESVVKELPSKVEHKILIE 819 Query: 883 LEGSQRELYDAIRLSTSEKVRKAIRERGLAKSHIVVLEALLRMRQACCDPALLNLGDGVQ 942 + Q+E+Y A + EK+ ++I E+G+ S ++ L R+RQ C +P + + Sbjct: 820 MSQKQKEVYYAYLKNAREKIYRSIEEKGINNSKFIIFSLLTRLRQICSNPR--TVVENYN 877 Query: 943 RPSAKLDRLMEMVEELLSEKRKIIVFSQFTSMLALIRKRCDALAIRYSVLTGET--KDRR 1000 +AK+D LM+ ++ ++ + +I+VFSQFTS+L I+ + I L G T KDR Sbjct: 878 GKNAKMDVLMDTIKTSIANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNTKMKDRF 937 Query: 1001 SAIDGFQNGASDLFLISLKAGGVGLNLTAADTVIIFDPWWNPAVEEQAIDRAHRIGQDKA 1060 D F G ++FLISLKAGG GLNLT AD V+ FDPWWNPAVE QA DRAHRIGQ K Sbjct: 938 QLADEFNKGKGEVFLISLKAGGTGLNLTGADIVVHFDPWWNPAVENQASDRAHRIGQKKN 997 Query: 1061 VFVYRLVAAGTIEEKMDELKARKRALADSIFD----SQGRIGAALTEEDVQKLF 1110 V + +L+ GTIEEK+ +L+ K+ + D++ S+ + L E+ ++ +F Sbjct: 998 VEIIKLITRGTIEEKIYKLQQEKKKMVDNVLGDKMFSEENVLLNLDEQKIKNIF 1051 >CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cpn Chlamydophila pneumoniae CWL029 Length = 1166 Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/475 (42%), Positives = 281/475 (59%), Gaps = 11/475 (2%) Query: 643 LPSDFNAALRPYQTQGVAWLDLLRESGLGGVLADDMGLGKTVQ-ILALL--ALEKARGHL 699 +P A LR YQT+GV WL+ LR+ L G+LADDMGLGKT+Q I+A+ LEK G Sbjct: 694 VPQQIQATLRSYQTEGVHWLERLRKMHLNGILADDMGLGKTLQAIIAVTQSKLEKGSG-- 751 Query: 700 TDPAIVIAPTSLMTNWFNEARKFTPGLRVLVLHG--PDRRQSFEAIADHDLVLTTYPLIA 757 ++++ PTSL+ NW E RKF P R LV+ G RR+ A+AD D+ +T+Y L+ Sbjct: 752 --CSLIVCPTSLVYNWKEEFRKFNPEFRTLVIDGVPSQRRKQLTALADRDVAITSYNLLQ 809 Query: 758 RDHEVLLAREWHVAVLDEAQTIKNSNTATTRRLQGIRARHRFCLTGTPMENHLGELWSIM 817 +D E+ + + VLDEA IKN T + ++ I++ HR LTGTP+EN L ELWS+ Sbjct: 810 KDVELYKSFRFDYVVLDEAHHIKNRTTRNAKSVKMIQSDHRLILTGTPIENSLEELWSLF 869 Query: 818 SFANPGYLGDRATFVRDW-RTPIEKRADLGRARVLTHRIKPFLLRRTKQEVAAELPPKSE 876 F PG L FV + RT L ++ PF+LRR K++V +LPP SE Sbjct: 870 DFLMPGLLSSYDRFVGKYIRTGNYMGNKADNMVALKKKVSPFILRRMKEDVLKDLPPVSE 929 Query: 877 FTEGVVLEGSQRELYDAIRLSTSEKVRKAIRERGLAKSHIVVLEALLRMRQACCDPALLN 936 L SQ+ELY + S +++ + +++ G + HI VL L R++Q CC PA+ Sbjct: 930 ILYHCHLTESQKELYQSYAASAKQELSRLVKQEGFERIHIHVLATLTRLKQICCHPAIFA 989 Query: 937 LGDGVQRPSAKLDRLMEMVEELLSEKRKIIVFSQFTSMLALIRKRCDALAIRYSVLTGET 996 SAK D LM+++ L+ K +VFSQ+T ML +I+K ++ I + L G T Sbjct: 990 KDAPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKMLGIIKKDLESRGIPFVYLDGST 1049 Query: 997 KDRRSAIDGFQNGASDL-FLISLKAGGVGLNLTAADTVIIFDPWWNPAVEEQAIDRAHRI 1055 K+R ++ F S L FLISLKAGG GLNL ADTVI +D WWNPAVE QA DR HRI Sbjct: 1050 KNRLDLVNQFNEDPSLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVENQATDRVHRI 1109 Query: 1056 GQDKAVFVYRLVAAGTIEEKMDELKARKRALADSIFDSQGRIGAALTEEDVQKLF 1110 GQ ++V Y+LV TIEEK+ L+ RK++L + +S + + LT E+V +L Sbjct: 1110 GQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVINSDDEVVSKLTWEEVLELL 1164