BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0034.p (364 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1850 [K] COG4977 Transcriptional regulator containing an amida... 199 9e-51 CC2960 Non COG 187 4e-47 mll5195 [K] COG4977 Transcriptional regulator containing an amid... 177 3e-44 PA3782 [K] COG4977 Transcriptional regulator containing an amida... 174 2e-43 SMb20215 [K] COG4977 Transcriptional regulator containing an ami... 171 3e-42 >PA1850 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 334 Score = 199 bits (506), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/330 (37%), Positives = 178/330 (53%), Gaps = 17/330 (5%) Query: 49 VAIAIHEGVQALDVAGPVDVFAETN------GFVPAGDGYETVLVGAGCEPLRASNGMKI 102 +A I+ V +LDV GP+ VFA N G P Y ++G E + +S G++I Sbjct: 7 IACLIYPDVMSLDVTGPLQVFASANVERQRQGLPPF---YRIQVLGERSEAVPSSAGIRI 63 Query: 103 SADLSFAEAQ-QKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGH 161 ADL++ + + D LLV GG + + +L WL+ A GS+C+GA L Sbjct: 64 CADLAWRDCPPESLDTLLVPGGLGVEAQTRNADLLAWLKAAEPCIRRLGSVCSGALILAA 123 Query: 162 AGLLDGHKVTTHWQNAQRLAARFPAAEVIFDRIY-----IRDG--HLMTSAGVTAGIDLG 214 AG+LDG TTHW + L FP V DR++ RDG H+ TSAGVTAGIDL Sbjct: 124 AGVLDGRPATTHWADVATLRQGFPGVHVQGDRLHTYDPRCRDGDAHIFTSAGVTAGIDLA 183 Query: 215 LALVAERHGPQVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDE 274 LALV G +A++VA+RLV+ +R GGQ+QFS +LT +A + ++ Sbjct: 184 LALVEADLGRSLALSVARRLVMFLKRPGGQAQFSAWLTPEPSRTPRLAALLEWIPANLAG 243 Query: 275 RHTLQSLAEAVGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDC 334 +L++LA+ MS R R F QE G+ P +VER R++AAR LL+ + + V+ C Sbjct: 244 DLSLEALADQACMSPRTLSRVFLQELGVAPGRYVERVRLEAARALLQDAQASIATVSRLC 303 Query: 335 GFGSADRMRIVFSERLGVSPAQYRASFRKL 364 GFG + +R F + L VSP +Y F L Sbjct: 304 GFGHPENLRRTFHKHLSVSPQEYAERFGML 333 >CC2960 Non COG Length = 312 Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 167/311 (53%), Gaps = 9/311 (2%) Query: 49 VAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKISADLSF 108 + ++ G Q LD GP+ F P + + G P +++GM + + Sbjct: 5 IGFLVYPGFQLLDATGPIAAFEIAGRLAPGAYSLHFLSLRGGLIP--STSGMVVQTK-AL 61 Query: 109 AEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAGLLDGH 168 AEA D LL+AGG A+ A PE ++R A A S+C+G + L AGLLDG Sbjct: 62 AEAP-PLDTLLIAGGDAVKVPASCPETLAFVRQAGRSARRVASVCSGTYVLAEAGLLDGK 120 Query: 169 KVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHGPQVAV 228 + TTHW + R+P + DRI+I+DG + +SAG+TAGIDL LAL+ G VA Sbjct: 121 RATTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEGEAVAR 180 Query: 229 AVAKRLVVVAQRQGGQSQFSPYLTA-PVDEDSPIARAQAHVMQHVDERHTLQSLAEAVGM 287 A++LVV R GGQSQ S + P D ++ A+ Q++ E +++ LA+ M Sbjct: 181 RTAQQLVVYHHRPGGQSQHSALIDLRPGRFDGLLSWAR----QNLSEPLSVEQLADRAAM 236 Query: 288 SVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMRIVFS 347 S RNF R FAQETG+TP + +ER RV+AAR LL+ ++ VA + GFG +RMR F Sbjct: 237 SPRNFARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVEDVALETGFGDPERMRRAFI 296 Query: 348 ERLGVSPAQYR 358 G P R Sbjct: 297 RAFGQPPQALR 307 >mll5195 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 325 Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 164/287 (57%), Gaps = 11/287 (3%) Query: 46 VQRVAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKISAD 105 ++V I IH G Q LD AGP F GF Y ++ G E + +S+GM+++A Sbjct: 32 TRKVGIIIHPGFQLLDAAGPAAAFELAEGFCVGS--YMLEILAPGGEEIESSSGMRLAAR 89 Query: 106 -LSFAEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAGL 164 LS ++ D +++GG + A E+ WLR R S+CTGA+ L AGL Sbjct: 90 PLSM---EEPLDTAIISGGEIIRSMAAAQEIVAWLRRTGVRRT--ASVCTGAYLLAEAGL 144 Query: 165 LDGHKVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHGP 224 LDG + TTHW + A R+PA ++ +RI++RDG + TSAG++AGIDL LAL+ + GP Sbjct: 145 LDGRRATTHWWSTHDFARRYPAVKLDAERIFVRDGSVWTSAGISAGIDLALALIEDDLGP 204 Query: 225 QVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAEA 284 +A VA++LVV +R GGQSQFS + I + + + + T++ LA+ Sbjct: 205 AIARRVAQQLVVHQRRPGGQSQFSALVELGGRTGRFIELIE-WMRTALAQPLTVECLADR 263 Query: 285 VGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVA 331 MS R+F RAF ETG TP + VER R+++AR +E + P +++A Sbjct: 264 AAMSPRHFARAFKAETGTTPAKAVERIRLESARIAVETA--PCRSIA 308 >PA3782 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 317 Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 165/321 (51%), Gaps = 9/321 (2%) Query: 44 MAVQRVAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKIS 103 M+ Q VA+ + + ++ P VF + + P ++ + A LR + G I Sbjct: 1 MSRQSVAVVAFDRISPFHLSVPCLVFGQ-ECYDPCAQAFDLRVCTAEPGRLRTTVGFTIE 59 Query: 104 ADL---SFAEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALG 160 A+ + AEAQ ++ P P L L A AR +C GAF L Sbjct: 60 AEAGLEALAEAQT-----VIVPSWRDPHERPPQALLDALIAARARGAQLVGLCLGAFVLA 114 Query: 161 HAGLLDGHKVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAE 220 AGLLDG + TTHW A+ A RFPA V D +YI D L+TSAG AGID L LV + Sbjct: 115 EAGLLDGRRATTHWMWAEDFAGRFPAVRVEPDVLYIEDDGLLTSAGTVAGIDCCLHLVRQ 174 Query: 221 RHGPQVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQS 280 R G Q +A+RLVV RQGGQ+QF +D + + Q++D+ H+L S Sbjct: 175 RLGAQTTNHLARRLVVAPHRQGGQAQFIEQPLPDSAQDGRLGELLVWLRQNLDQAHSLDS 234 Query: 281 LAEAVGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSAD 340 LA+ V MS R F R F Q TG T ++++ R+ A+RLLE ++ ++A+A GFGSA Sbjct: 235 LAQRVLMSRRTFTRHFRQLTGTTVSQWLQAERLALAQRLLETTEHSVQAIAGLAGFGSAV 294 Query: 341 RMRIVFSERLGVSPAQYRASF 361 +R FS G+ P YR +F Sbjct: 295 SLRQQFSAAFGLPPLGYRRAF 315 >SMb20215 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Sme Sinorhizobium meliloti Length = 326 Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 156/282 (55%), Gaps = 6/282 (2%) Query: 82 YETVLVGAGCEPLRASNGMKISADLSFAEAQQKFDILLVAGGPALPDAAPDPELTQWLRG 141 YE L+ +++S G + L+ +D ++ G + P L ++ R Sbjct: 46 YEIELLSEAGGEVKSSAGFGV---LTKTFDHTAYDTVMFGAGVQIEPMTPG--LVEFARR 100 Query: 142 APARAELYGSICTGAFALGHAGLLDGHKVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHL 201 + A + CTGAF L +GLLDG + TTHW A++L RFPA +V DRI+I DG + Sbjct: 101 SFETARRVAAPCTGAFVLAESGLLDGRRATTHWAFARQLQDRFPAVKVEEDRIFIVDGSV 160 Query: 202 MTSAGVTAGIDLGLALVAERHGPQVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPI 261 TSAG+TA IDL LA+V + +G VA +VA++LVV +R GGQSQFS L D I Sbjct: 161 WTSAGMTASIDLALAMVEKDYGQGVARSVARKLVVYHRRAGGQSQFSALLELEPKSDR-I 219 Query: 262 ARAQAHVMQHVDERHTLQSLAEAVGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLE 321 R+ + ++ +++ LA+A G+S R F RAF ETG +P + VE RV+AAR ++E Sbjct: 220 QRSIDYAKANLRRGLSVEELADAAGLSARQFSRAFRAETGQSPAKAVETLRVEAARLMME 279 Query: 322 GSDRPLKAVAFDCGFGSADRMRIVFSERLGVSPAQYRASFRK 363 + +A + GF ADRMR F LG P R + R+ Sbjct: 280 QGRHSMDVIAEETGFAIADRMRRAFLRTLGQPPQTIRRNARE 321