BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0026.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0888 [K] COG2771 DNA-binding HTH domain-containing proteins V...   167   1e-41
PA1136 [K] COG2771 DNA-binding HTH domain-containing proteins Pa...   105   4e-23

>VCA0888 [K] COG2771 DNA-binding HTH domain-containing proteins Vch Vibrio
           cholerae
          Length = 253

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 99/154 (64%)

Query: 5   IEAVVAIEGSETLPAIQAAVRSASVPLGYDRFVMFSASPAREGLVDRIYWVEGDWFGTGV 64
           I  +  +E S +   +Q  VR  +   GYD+ V FSA    +G+++RIYW+EGDWF  G 
Sbjct: 21  ITLISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGE 80

Query: 65  TVDAETYVRHCPVTRNFLNVDEAFFWTKVMSARGEKYRVVRTPRGPGFHGLQVPVFGRTG 124
            +DA TY+++CP+TR+ +  D  FFWTK      E+YRVV  P+G G HGLQ+P+FG  G
Sbjct: 81  NIDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLG 140

Query: 125 LEGAMSFAGTRIDASPRTRAALTMIGAAAFRAAR 158
           LEGA+S  G  ID+SPR R  L+++   AF AAR
Sbjct: 141 LEGAVSLGGKAIDSSPRARCELSLLSTYAFFAAR 174


>PA1136 [K] COG2771 DNA-binding HTH domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 243

 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 5/120 (4%)

Query: 31  LGYDRFVMFSA--SPAREGLVDRIYWVEGDWFGTGVTVDAETYVRHCPVTRNFLNVDEAF 88
           LG+DR ++ S    P  + L+D +++V GDW       + + Y+ HCPVTR+ L +DE F
Sbjct: 35  LGFDRVIVCSLFPRPDEDELIDELFFVHGDWAEGRSAQERDAYLLHCPVTRHILELDEPF 94

Query: 89  FWTKVMSARGEK--YRVVRTPRGPG-FHGLQVPVFGRTGLEGAMSFAGTRIDASPRTRAA 145
           FW+K  S   E+  YR+VR  R  G  +G+QVPVFGR GLEGA+SFAG R+D +   + A
Sbjct: 95  FWSKSPSEDPERMTYRIVRGVRDLGQVNGMQVPVFGRNGLEGAVSFAGERLDLNAGCKLA 154