BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0025.p         (75 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0888 [K] COG2771 DNA-binding HTH domain-containing proteins V...    87   8e-18
PA1136 [K] COG2771 DNA-binding HTH domain-containing proteins Pa...    65   3e-11
mlr5637 [K] COG2771 DNA-binding HTH domain-containing proteins M...    58   6e-09

>VCA0888 [K] COG2771 DNA-binding HTH domain-containing proteins Vch Vibrio
           cholerae
          Length = 253

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 59/72 (81%)

Query: 2   MEAHEPNGASSLSPREREVLRWISAGRRQADIAASLGLSERTVENHLRHARLRLGVATTA 61
           +E+ +PN ++ LS RE+EVL   + GRRQADIA +LG+S RT+ENHLR+ARL+LG ATTA
Sbjct: 177 LESSDPNRSALLSKREKEVLSLTALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTA 236

Query: 62  QAIRLAIRSGEI 73
           + IR+AI+ G+I
Sbjct: 237 ETIRIAIQRGDI 248


>PA1136 [K] COG2771 DNA-binding HTH domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 243

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 10  ASSLSPREREVLRWISAGRRQADIAASLGLSERTVENHLRHARLRLGVATTAQAIRLAIR 69
           A +LS REREVL+WI+ G++QA++AA L +SERTVENHLR AR RLG A+TAQA+  A+R
Sbjct: 178 AQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALR 237

Query: 70  SGEIE 74
            G+IE
Sbjct: 238 LGDIE 242


>mlr5637 [K] COG2771 DNA-binding HTH domain-containing proteins Mlo
           Mesorhizobium loti
          Length = 243

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 13  LSPREREVLRWISAGRRQADIAASLGLSERTVENHLRHARLRLGVATTAQAIRLAIRSGE 72
           L+PRERE L+W + G+ + +I+  LG+SE T E HL +A+ +LG     QA+  AIR G 
Sbjct: 182 LTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGY 241

Query: 73  I 73
           I
Sbjct: 242 I 242