BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0023.p         (313 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3718 [GEPR] COG0477 Permeases of the major facilitator superfa...   149   1e-35
SMa1937 [GEPR] COG0477 Permeases of the major facilitator superf...   141   2e-33

>PA3718 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 413

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 153/295 (51%), Gaps = 33/295 (11%)

Query: 40  QQSEAKRWATIAIVIGCGIGAALQVGKVPIAASMLQQSLGIDLAAVGTIAGIFAVLGLVG 99
               + RW  +A VI  GI AAL VGK  IA   LQ+S G DLAA+  I   F  +G+ G
Sbjct: 11  HPQASPRWLAVANVIFAGIAAALHVGKATIALPSLQRSFGGDLAALSWIMSAFPFVGVFG 70

Query: 100 SVPAGVVIAAVGARRVL-----------------------LASRLLEGLGFLLVMVAAPA 136
            + AG+++   G RR+L                       LA+R +EGLGFL+V+VAAPA
Sbjct: 71  GIAAGLLVRRWGDRRLLTGGLAILGGASLLGASMQDFTWLLATRFVEGLGFLIVVVAAPA 130

Query: 137 LLDRVVDVSARDVTMAVWSCVMPFGIALALVAGPIFDGWRTIWWAGAAFAGVLFILASLI 196
           +L R+   + R V   +WS  M  GIAL+++ GP+   WR  W   A    V  +L  L 
Sbjct: 131 VLHRITSETRRSVVFGLWSTFMAGGIALSMLFGPLLADWRADWQLSALLVLVAALLLPLS 190

Query: 197 APEV----ASRYRPARANLMQEATALAQRRTPALLMVLFALYSMMFFALFSFLPILLTER 252
            P      A+  RPA    + +  A+       LL + F  Y++ FFAL +FLP+ L +R
Sbjct: 191 VPADDGCRAAGVRPAGLGTLLKVPAI------TLLALGFTTYNLQFFALMTFLPVFLMQR 244

Query: 253 LGVSSQGAGALSALAAAGNVVGNLAAGHLLARGVSRNLLIAVAAFAMGASALGIF 307
           LGV+ + AG + A   A N +GN+AAG +L+RG+    L+A  A  MG +    F
Sbjct: 245 LGVALETAGLIGAAIVAANALGNVAAGFILSRGIRPGALLASTAILMGLTGAAFF 299


>SMa1937 [GEPR] COG0477 Permeases of the major facilitator superfamily Sme
           Sinorhizobium meliloti
          Length = 412

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 30/293 (10%)

Query: 42  SEAKRWATIAIVIGCGIGAALQVGKVPIAASMLQQSLGIDLAAVGTIAGIFAVLGLVGSV 101
           S    W  I++V+G G+ +A QVGK P A + +Q  L + LAA   +   FA+LG +   
Sbjct: 8   SGGSAWPRISLVVGAGVVSAFQVGKAPAALAAVQGDLALSLAAASWLISAFAILGALAGA 67

Query: 102 PAGVVIAAVGARRV-----------------------LLASRLLEGLGFLLVMVAAPALL 138
           P G+ +  +GAR +                       LLA+R++EGLGFL ++VAAPAL+
Sbjct: 68  PIGLAVDRIGARTMASLGLLLQAAGSALGALSPGFTALLATRVIEGLGFLCLVVAAPALI 127

Query: 139 DRVVDVSARDVTMAVWSCVMPFGIALALVAGPIFD--GWRTIWWAGAAF--AGVLFILAS 194
             +  +  RD  MA+W+  MP G+ + ++A P+     WR  W+  A+   +  + +   
Sbjct: 128 AGLAPIQIRDRAMALWASFMPVGLTVIMLAAPLLSIVTWRGFWFLNASILVSYAMLLRWG 187

Query: 195 LIAPEVASRYRPARANLMQEATALAQRRTPALLMVLFALYSMMFFALFSFLPILLTERLG 254
           L  P   +  RP R  + Q+         P +L  LF  +S +FFA+F  LP LL++RLG
Sbjct: 188 LHPPP--NHPRPYR-KIHQDIGEALVSPGPWVLGGLFTAFSAIFFAVFGLLPPLLSQRLG 244

Query: 255 VSSQGAGALSALAAAGNVVGNLAAGHLLARGVSRNLLIAVAAFAMGASALGIF 307
           +S++ A  LSALA A + VGNL  G LLARG     L+  +   M    +GIF
Sbjct: 245 ISNETASMLSALAIAASGVGNLVCGQLLARGFQPARLLNFSFGIMALCGIGIF 297