BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0011.p (471 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2977 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 194 4e-49 AGpT48 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su... 181 4e-45 PA4483 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su... 178 3e-44 NMB1356 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 164 5e-40 NMA1568 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 164 5e-40 >CAC2977 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Cac Clostridium acetobutylicum Length = 478 Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 150/478 (31%), Positives = 238/478 (49%), Gaps = 56/478 (11%) Query: 26 AVRNGDITSEAYTAALLQR-ARALAELNAFITIDETAVLAAARDADKARAAG-SAALLLG 83 A+ + + SE A R E+NA+IT+ E L A+D DK A G L G Sbjct: 14 AILDKHLKSEDIVKAYFDNIKRNEPEINAYITLCEDYALKEAKDVDKKIANGDKVGRLAG 73 Query: 84 VPLGVKDSYLTKGLPTSLGLDSLARFVPREDADAVRAIKGAGALVFGKNNLVEMSYGLTG 143 +P+ +KD+ T G+ T+ L FVP DA ++ +K A++ GK N+ E + G + Sbjct: 74 IPIAIKDNICTDGIKTTCASKMLYDFVPPYDATVIKKLKAEDAIIIGKVNMDEFAMGSST 133 Query: 144 HNERYGQVKNPH-------------ARXVAAGLVPASLGGDTVGSIRVPASFCGVVGFKP 190 N + KNP A VAA + P SLG DT GSIR PA+FCGVVG KP Sbjct: 134 ENSAFKITKNPRDITRVPGGSSGGSAAVVAAKMAPISLGSDTGGSIRQPAAFCGVVGLKP 193 Query: 191 TTGRWPRNGVAPISHTLDTTGAFARSVEDCILLDQVVTGEQTAEFS-------------- 236 T G R G+ + +LD G ++V+DC L +V++GE + + Sbjct: 194 TYGLVSRFGLIAFASSLDQIGPLGKTVKDCAELLEVISGEDELDNTSSKKHEKEDYLEGI 253 Query: 237 DDGNDLRGVRLAFAPRQFL-DLVDSEVEIRFREAVRQLRDAGAEVIEVDLGDDFNALIQT 295 DDG ++G+++ P++FL D +D E+ + + +L+ GAEV E+ L L + Sbjct: 254 DDG--IKGMKIGM-PKEFLNDGLDPEIRKCIDDTIEKLKSLGAEVCEMSLPITEEGL--S 308 Query: 296 ATWDIFAHETMGAISDF--LRRHDVPTTFEAIYDGLKPQLRQAWGHIV---LPGGAGAVS 350 A + I + E ++ F +R P FE +YD ++ +A+G V + G A+S Sbjct: 309 AYYIISSAEASSNLARFDGIRYGYRPDDFEDVYDLMETSRSEAFGDEVKRRIMLGTYALS 368 Query: 351 A----EAYQTALNVSRPEIRRRLDKAFVAEGAQIILQPTTPC-PAPLIEEQATVRVAGQD 405 + Y+ AL + + +I+ +AF E +IL P +P P + E++A D Sbjct: 369 SGYYDAYYKRALKLKK-KIKNEFKEAF--ENYDLILSPVSPVLPFKIGEKKA-------D 418 Query: 406 VSYLALAN-HTVSASSVGLPGISLPVGRSRAGLPLGLELDASVGSDRTLLVLARKIER 462 + LA+ +TV+ + G+P ISLP S+ GLP+GL+L ++ + AR +E+ Sbjct: 419 PLQMYLADIYTVNINLAGIPAISLPCSVSKEGLPIGLQLLGPHFGEKKIFRAARALEK 476 >AGpT48 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 467 Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 220/469 (46%), Gaps = 34/469 (7%) Query: 20 LATAAAAVRNGDITSEAYTAALLQRARALAELNAFITIDETAVLAAARDADKARAAGSAA 79 LA +R D + L+ R +A LNA + D + +A+ D+ AG Sbjct: 7 LAQTLERLRRKDYSCLELVETLIARCQAAKPLNALLATDWDGLRRSAKKIDRHGNAGLG- 65 Query: 80 LLLGVPLGVKDSYLTKGLPTSLGLDSLARFVPREDADAVRAIKGAGALVFGKNNLVEMSY 139 L G+PL K + T PTS +L +P+ + + AGAL N+ E+S+ Sbjct: 66 -LCGIPLCFKANIATGIFPTSAATPALINHLPKIPSRVAERLFSAGALPGASGNMHELSF 124 Query: 140 GLTGHNERYGQVKNPH-------------ARXVAAGLVPASLGGDTVGSIRVPASFCGVV 186 G+T +N G V+NP A VA+ L+ +G DT S+R+PA+ CGVV Sbjct: 125 GITSNNYATGAVRNPWNPSLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVV 184 Query: 187 GFKPTTGRWPRNGVAPISHTLDTTGAFARSVEDCILLDQVVTGEQTAEFSDDGNDLRGVR 246 GF+PT R+PR+ + P+S T DT G A+ V D I+LDQV++G ++A+ S L+G+R Sbjct: 185 GFRPTLARYPRDRIIPVSPTRDTAGIIAQCVADVIILDQVISG-RSAKISP--MPLKGLR 241 Query: 247 LAFAPRQFLDLVDSEVEIRFREAVRQLRDAGAEVIEVDLGDDFNALIQTATWDIFAHETM 306 + F D +D++V +R L + G +E D+ L A+ I +E Sbjct: 242 IGLPTTYFYDDLDADVAFAAETTIRLLANRGVTFVEADI-PHLEELNSGASLPIALYEFP 300 Query: 307 GAISDFLRRHDVPTTFEAIYDGLK-PQL-----RQAWGHIVLPGGAGAVSAEAYQTALNV 360 A+ +L +F + G++ P + Q GH +S + Y+ A Sbjct: 301 HALKKYLDDFVGTVSFSDVIKGIRSPDVANIVSAQIDGH--------QISNDEYELARQS 352 Query: 361 SRPEIRRRLDKAFVAEGAQIILQPTTPCPAPLIEEQATVRVAGQDVSYLALANHTVSASS 420 RP ++ F IL PT P A I ++++V G ++ + V SS Sbjct: 353 FRPRLQATYRNYFRLYQLDAILFPTAPLAAKAIGQESSVIHNGSMMNTFKIYVRNVDPSS 412 Query: 421 -VGLPGISLPVGRSRAGLPLGLELDASVGSDRTLLVLARKIERVLGTAS 468 GLPG+SLP + LP+G+E+D GSD LL + +E+ + S Sbjct: 413 NAGLPGLSLPACLTPDRLPVGMEIDGLAGSDHRLLAIGAALEKAINFPS 461 >PA4483 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Pae Pseudomonas aeruginosa Length = 484 Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 242/484 (50%), Gaps = 57/484 (11%) Query: 20 LATAAAAVRNGDITSEAYTAALLQRARAL-AELNAFITIDETAVLAAARDADKARAAGSA 78 LA A A+ + ++E T LL R R L +LN+FI+I + +A A+ AD+ RA G Sbjct: 7 LAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERRANGEN 66 Query: 79 ALLLGVPLGVKDSYLTKGLPTSLGLDSLARFVPREDADAVRAIKGAGALVFGKNNLVEMS 138 LLG P+ KD + T+G+ TS G L FV DA V + AGA+ GK N+ E + Sbjct: 67 GALLGAPIAHKDLFCTQGVRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLNMDEFA 126 Query: 139 YGLTGHNERYGQVKNPHA-------------RXVAAGLVPASLGGDTVGSIRVPASFCGV 185 G + + YG VKNP + VAA L+PA+ G DT GSIR PA+ + Sbjct: 127 MGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNL 186 Query: 186 VGFKPTTGRWPRNGVAPISHTLDTTGAFARSVEDCILLDQVVTGEQTAEFS------DD- 238 G KPT GR R G+ + +LD G AR+ EDC L+ V+ G + + DD Sbjct: 187 TGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKDSTSVEQPVDDY 246 Query: 239 ----GNDLRGVRLAFAPRQFLDL-VDSEVEIRFREAVRQLRDAGAEVIEVDLGDDFNALI 293 L G+R+ PR++ +DS + V +L+ GA V ++ L + +A+ Sbjct: 247 LAALQKPLSGLRIGL-PREYFGAGLDSRIADAVLAVVEELKTLGATVKDISLPNMQHAI- 304 Query: 294 QTATWDIFAHETMGAISDF--LR---RHDVPTTFEAIY-----DGLKPQLRQAWGHIVLP 343 A + I E +S F +R R D P E +Y +G +++ I++ Sbjct: 305 -PAYYVIAPAEASSNLSRFDGVRYGYRCDAPQNLEDLYKRSRAEGFGSEVKN---RIMV- 359 Query: 344 GGAGAVSAEAYQTALNVSRPEIRRRLDKAFVAEGAQ--IILQPTTPCPAPLIEEQATVRV 401 G A+SA Y A + +IRR + FV+ A+ +IL PTTP PA I E+ V Sbjct: 360 -GTYALSA-GYYDAYYLQAQKIRRLIKNDFVSAFAEVDVILGPTTPNPAWKIGEKNDDPV 417 Query: 402 AG--QDVSYLALANHTVSASSVGLPGISLPVGRSRAGLPLGLELDASVGSDRTLLVLARK 459 + +D+ +T++A+ GLPG+S+P G GLP+G++L A + LL +A + Sbjct: 418 SQYLEDI-------YTITANLAGLPGLSMPAGFVD-GLPVGVQLLAPYFQEGRLLNVAHQ 469 Query: 460 IERV 463 ++V Sbjct: 470 YQQV 473 >NMB1356 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Nme Neisseria meningitidis MC58 Length = 481 Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 144/490 (29%), Positives = 227/490 (46%), Gaps = 63/490 (12%) Query: 15 VSSFGLATAAAAVRNGDITS----EAYTAALLQRARALAELNAFITIDETAVLAAARDAD 70 ++ + L A+ +++ I++ AY AA+ ++ AL N +ITID+ LA AR AD Sbjct: 1 MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPAL---NGYITIDQDKTLAEARAAD 57 Query: 71 KARAAGSAALLLGVPLGVKDSYLTKGLPTSLGLDSLARFVPREDADAVRAIKGAGALVFG 130 + A G+A+ L GVP+ KD + G ++ L F+ A V+ + G + G Sbjct: 58 ERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTATVVQNLLDEGMVTLG 117 Query: 131 KNNLVEMSYGLTGHNERYGQVKNP-------------HARXVAAGLVPASLGGDTVGSIR 177 + N+ E + G T N YG KNP A VAA L PA+LG DT GSIR Sbjct: 118 RTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIR 177 Query: 178 VPASFCGVVGFKPTTGRWPRNGVAPISHTLDTTGAFARSVEDCILLDQVVTG-------- 229 PAS CG+ G KPT G R G+ + + D TG A++ EDC +L + G Sbjct: 178 QPASHCGITGIKPTYGTVSRFGMVAYASSFDQTGPMAQTAEDCAILLNAMAGFDPKDSTS 237 Query: 230 --EQTAEFSDDGND-LRGVRLAFAPRQFLDLVDSEVEIRFREAVRQLRDAGAEVIEVDLG 286 + +++ D N L+G+++ F + ++V + + L+ GAE+IEV L Sbjct: 238 LEREKEDYTRDLNQPLKGLKIGLPKEYFGEGNSADVLTALQNTIDLLKAQGAELIEVSLP 297 Query: 287 DDFNALIQTATWDIFAHETMGAIS--DFLRRHDVPTTF---EAIYD-------GLKPQLR 334 L A + + + E +S D +R F E +Y G + + R Sbjct: 298 Q--TKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFADLEEMYGKTRAEGFGSEVKRR 355 Query: 335 QAWGHIVLPGGAGAVSAEAYQTALNVSRPEIRRRLDKAFVAEGAQ--IILQPTTPCPAPL 392 G VL G Y A + ++RR + F A+ +IL PT P AP Sbjct: 356 IMIGTYVLSHG--------YYDAYYLKAQKLRRLVADDFQTAFARCDLILAPTAPTAAPK 407 Query: 393 IEEQAT-VRVAGQDVSYLALANHTVSASSVGLPGISLPVGRSRAGLPLGLELDASVGSDR 451 I A+ V D+ +T++ + GLP ++LP G S GLP+G++L + ++ Sbjct: 408 IGADASPVETYLSDI-------YTIAVNLAGLPALTLPAGFSGGGLPVGVQLVGNYFAEA 460 Query: 452 TLLVLARKIE 461 +L A +I+ Sbjct: 461 KILGAAHQIQ 470 >NMA1568 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases NmA Neisseria meningitidis Z2491 Length = 481 Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 143/490 (29%), Positives = 226/490 (46%), Gaps = 63/490 (12%) Query: 15 VSSFGLATAAAAVRNGDITS----EAYTAALLQRARALAELNAFITIDETAVLAAARDAD 70 ++ + L A+ +++ I++ AY AA+ ++ AL N +ITID+ LA AR AD Sbjct: 1 MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPAL---NGYITIDQDKTLAEARAAD 57 Query: 71 KARAAGSAALLLGVPLGVKDSYLTKGLPTSLGLDSLARFVPREDADAVRAIKGAGALVFG 130 + A G+A+ L G+P+ KD + G ++ L F+ A V+ + G + G Sbjct: 58 ERIAQGNASALTGIPVAYKDIFCQTGWRSACASKMLDNFISPYTATVVQKLLDEGMVTLG 117 Query: 131 KNNLVEMSYGLTGHNERYGQVKNP-------------HARXVAAGLVPASLGGDTVGSIR 177 + N+ E + G T N YG KNP A VAA L PA+LG DT GSIR Sbjct: 118 RTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIR 177 Query: 178 VPASFCGVVGFKPTTGRWPRNGVAPISHTLDTTGAFARSVEDCILLDQVVTG-------- 229 PAS CG+ G KPT G R G+ + + D G A++ EDC +L + G Sbjct: 178 QPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAEDCAILLNAMAGFDPKDSTS 237 Query: 230 --EQTAEFSDDGND-LRGVRLAFAPRQFLDLVDSEVEIRFREAVRQLRDAGAEVIEVDLG 286 + +++ D N L+G+++ F + ++V + + L+ GAE+IEV L Sbjct: 238 LEREKEDYTRDLNQPLKGLKIGLPKEYFGEGNSADVLTALQNTIDLLKAQGAELIEVSLP 297 Query: 287 DDFNALIQTATWDIFAHETMGAIS--DFLRRHDVPTTF---EAIYD-------GLKPQLR 334 L A + + + E +S D +R F E +Y G + + R Sbjct: 298 Q--TKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFSDLEEMYGKTRAEGFGSEVKRR 355 Query: 335 QAWGHIVLPGGAGAVSAEAYQTALNVSRPEIRRRLDKAFVAEGAQ--IILQPTTPCPAPL 392 G VL G Y A + ++RR + F A+ +IL PT P AP Sbjct: 356 IMIGTYVLSHG--------YYDAYYLKAQKLRRLVADDFQTAFARCDLILAPTAPSAAPK 407 Query: 393 IEEQAT-VRVAGQDVSYLALANHTVSASSVGLPGISLPVGRSRAGLPLGLELDASVGSDR 451 I A+ V D+ +T++ + GLP ++LP G S GLP+G++L + S+ Sbjct: 408 IGADASPVETYLSDI-------YTIAVNLAGLPALTLPAGFSSGGLPIGVQLIGNYFSEA 460 Query: 452 TLLVLARKIE 461 +L A +I+ Sbjct: 461 KILGAAHQIQ 470