BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0002.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc03119 [E] COG0410 ABC-type branched-chain amino acid transpor...   166   2e-41
RSc3343 [E] COG0410 ABC-type branched-chain amino acid transport...   164   7e-41
BMEII0342 [E] COG0410 ABC-type branched-chain amino acid transpo...   164   1e-40
AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport...   162   3e-40
sll0374 [E] COG0410 ABC-type branched-chain amino acid transport...   115   5e-26

>SMc03119 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Sme Sinorhizobium meliloti
          Length = 233

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 99/138 (71%)

Query: 18  VLTVKDLQAWYGESHILHGINFNVKAGEVVTLLGRNGAGKTTTLKSVMGVIGKRSGSIRF 77
           +L V  L AWYGESH+LHG++  V  GE+VTLLGRNG GKTTTL+++MG++ +R G I F
Sbjct: 4   LLKVAGLNAWYGESHVLHGVDMTVGEGEMVTLLGRNGVGKTTTLRAIMGIVRERRGEISF 63

Query: 78  DNQEIIRATSDKIARLGIAFCPEERGIFASLDVRENLLLPPVVRPGGLPLDQIFTLFPNL 137
             ++++R    ++A  G+ F PEERGIF++L V ENLLLPP V  GG+ +D+IF LFPNL
Sbjct: 64  AGEDLMRVPLHRVAHRGLGFVPEERGIFSTLTVYENLLLPPAVAKGGMTIDEIFELFPNL 123

Query: 138 KERLTSQGTKLSAASSRC 155
            ER  S GTKLS    + 
Sbjct: 124 HERRNSAGTKLSGGEQQM 141


>RSc3343 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 246

 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 12/148 (8%)

Query: 19  LTVKDLQAWYGESHILHGINFNVKAGEVVTLLGRNGAGKTTTLKSVMGVIGKRSGSIRFD 78
           L +KDL AWYGESHILHG++  V  GEVVTLLGRNGAG+TTTL+++MG++G R GSI   
Sbjct: 6   LQIKDLHAWYGESHILHGVDLTVNRGEVVTLLGRNGAGRTTTLRAIMGLVGTRKGSIVVH 65

Query: 79  NQ-----EIIRATSDKIARLGIAFCPEERGIFASLDVRENLLLPPVVR-------PGGLP 126
           +      E I   + +IA  GI +CPEERGIFASL   ENLLLPPV++         G+ 
Sbjct: 66  DDAGQGVETIGLPTHRIAHCGIGYCPEERGIFASLSCEENLLLPPVLKGQVATRGNAGMS 125

Query: 127 LDQIFTLFPNLKERLTSQGTKLSAASSR 154
           + +I+ +FPNLKER  SQGT+LS    +
Sbjct: 126 VAEIYEMFPNLKERRNSQGTRLSGGEQQ 153


>BMEII0342 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Bme Brucella melitensis
          Length = 274

 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 103/142 (72%), Gaps = 5/142 (3%)

Query: 18  VLTVKDLQAWYGESHILHGINFNVKAGEVVTLLGRNGAGKTTTLKSVMGVIGKRSGSIRF 77
           +L+V+ L AWYGESH L G++ ++  GE +TLLGRNG GKTTTL+++MG+I KR+G+I  
Sbjct: 40  LLSVRGLYAWYGESHALQGVDLDIWPGETITLLGRNGVGKTTTLRAIMGIIRKRTGTITL 99

Query: 78  DNQEIIRATSDKIARLGIAFCPEERGIFASLDVRENLLLPPVVRPGG-----LPLDQIFT 132
           D ++I+R    +IA  G+ F PEERGIFASL+V ENLLLPPVV  GG     + LD+I+ 
Sbjct: 100 DGKDIMRVPLHRIAYEGLGFVPEERGIFASLNVHENLLLPPVVAKGGGSQGAMSLDEIYE 159

Query: 133 LFPNLKERLTSQGTKLSAASSR 154
           LFPNL ER  S GTKLS    +
Sbjct: 160 LFPNLYERRNSPGTKLSGGEQQ 181


>AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 233

 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 99/140 (70%)

Query: 16  ADVLTVKDLQAWYGESHILHGINFNVKAGEVVTLLGRNGAGKTTTLKSVMGVIGKRSGSI 75
           A +L V +L++WYGES  LHG++  V  GE +T+LGRNG GKTTTL+++MG+I  R G I
Sbjct: 2   AAMLEVSNLKSWYGESQALHGVDLTVGEGETITILGRNGVGKTTTLRTIMGIIRNRKGVI 61

Query: 76  RFDNQEIIRATSDKIARLGIAFCPEERGIFASLDVRENLLLPPVVRPGGLPLDQIFTLFP 135
           +   ++++     + A+ GI F PEERGIFA+L V ENL+LPPVV  GG+ LD+I+ LFP
Sbjct: 62  KLGGKDMMPVPLHRTAKYGIGFVPEERGIFATLSVEENLMLPPVVASGGMTLDEIYELFP 121

Query: 136 NLKERLTSQGTKLSAASSRC 155
           NL ER TS GTKLS    + 
Sbjct: 122 NLHERRTSPGTKLSGGEQQM 141


>sll0374 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Syn Synechocystis
          Length = 249

 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 7/143 (4%)

Query: 18  VLTVKDLQAWYGESHILHGINFNVKAGEVVTLLGRNGAGKTTTLKSVMGVIGKRSGSIRF 77
           +L + DL  +YGESHIL  ++ ++  G++V L+GRNG GKTT LK++MG++  RSG + +
Sbjct: 17  MLQISDLNVYYGESHILRNVDMSIAPGQMVCLIGRNGVGKTTLLKTIMGLLSPRSGYVVY 76

Query: 78  DNQEIIRATSDKIARLGIAFCPEERGIFASLDVRENLLL------PPVVRPGGLPLDQIF 131
            ++++    +DK ARLGI + P+ R I   L V+ENLLL          R  G+P D+IF
Sbjct: 77  GDRQLNSVPTDKRARLGIGYVPQGREIIPRLTVQENLLLGLEACADKSQRQKGIP-DEIF 135

Query: 132 TLFPNLKERLTSQGTKLSAASSR 154
            LFP LK  L+  G  LS    +
Sbjct: 136 ELFPVLKTMLSRWGGDLSGGQQQ 158