BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0135.0013.p         (209 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1330 [H] COG0303 Molybdopterin biosynthesis enzyme Rso Ralsto...   126   4e-29
PA3028 [H] COG0303 Molybdopterin biosynthesis enzyme Pae Pseudom...   119   7e-27
VC1527_2 [H] COG0303 Molybdopterin biosynthesis enzyme Vch Vibri...   115   9e-26
PA3914 [H] COG0303 Molybdopterin biosynthesis enzyme Pae Pseudom...   114   1e-25
STM0846 [H] COG0303 Molybdopterin biosynthesis enzyme Sty Salmon...   112   6e-25

>RSc1330 [H] COG0303 Molybdopterin biosynthesis enzyme Rso Ralstonia
           solanacearum
          Length = 419

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 14/180 (7%)

Query: 39  LKQVARRYDLILTTGGVSTGEEDHVRAGIEQAGSLVLWRMAIKPGRPVAMGIID------ 92
           L++ A  +DLI+T+GGVS GEEDH++  +E  G L LW++AIKPG+P+A G +       
Sbjct: 245 LREAAEAHDLIITSGGVSVGEEDHIKPAVEAEGRLNLWQIAIKPGKPLAFGEVRRPQGMA 304

Query: 93  GTP---LIGLPGNPVASFVTFVHVVRPTVLALSGAVPSPLLPMPVRAAFSYKKKSGRREY 149
           G P    IGLPGNPV+SFVTF+  VRP +L L G        +P+RA F+  K   R E+
Sbjct: 305 GGPAAFFIGLPGNPVSSFVTFLLFVRPFILRLLGVDDVTPKRIPMRADFALPKGDRRNEF 364

Query: 150 VRVSLRRTADGALEATKFPREGAGLLSSLIETDGLVELGESVVRVEPGDAVGFLGYADLL 209
           +R   R  A G L+   FP + +G+L+S +  DGL++       +  GD V FL +A L+
Sbjct: 365 LRA--RINAGGGLDL--FPNQSSGVLTSTVWGDGLID-NPPNQPIAAGDTVAFLPFAGLV 419


>PA3028 [H] COG0303 Molybdopterin biosynthesis enzyme Pae Pseudomonas
           aeruginosa
          Length = 405

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 6/163 (3%)

Query: 47  DLILTTGGVSTGEEDHVRAGIEQAGSLVLWRMAIKPGRPVAMGIIDGTPLIGLPGNPVAS 106
           DLIL+TGGVS GE D +   + +AG L LW++AIKPG+P+ +G   G P+IGLPGNP ++
Sbjct: 248 DLILSTGGVSVGEADFLGMALREAGELTLWKLAIKPGKPLTVGQFQGIPVIGLPGNPAST 307

Query: 107 FVTFVHVVRPTVLALSGAVPSPLLPMPVRAAFSYKKKSGRREYVRVSLRRTADGALEATK 166
            VTF  + RP +L   G      L + V A F++ K   RREY+R  L +       A  
Sbjct: 308 LVTFALLARPYLLRRLGVAQVAPLRVEVPAGFAWTKAGQRREYLRGRLEQG-----RAVL 362

Query: 167 FPREGAGLLSSLIETDGLVELGESVVRVEPGDAVGFLGYADLL 209
           +P + +G+L S    +GLVE+ E    VE G+ V F+  ++LL
Sbjct: 363 YPNQSSGVLRSASWAEGLVEVREGRTLVE-GEGVAFIPLSELL 404


>VC1527_2 [H] COG0303 Molybdopterin biosynthesis enzyme Vch Vibrio cholerae
          Length = 400

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 96/166 (57%)

Query: 35  MSAALKQVARRYDLILTTGGVSTGEEDHVRAGIEQAGSLVLWRMAIKPGRPVAMGIIDGT 94
           M   L+Q A++ D+++T+GGVS G+ D +++ +E+ G +  WR+ ++PGRP+A G I G 
Sbjct: 226 MMQVLEQAAKQADVVITSGGVSVGDADFIKSALEKLGQIDFWRINMRPGRPLAFGQIAGK 285

Query: 95  PLIGLPGNPVASFVTFVHVVRPTVLALSGAVPSPLLPMPVRAAFSYKKKSGRREYVRVSL 154
           P  GLPGNPVA  V+F++ V P +  + G      L +   A    + + GR E+ R   
Sbjct: 286 PFFGLPGNPVAVMVSFINFVEPALRKMQGEQGWQPLKVNAIALEDLRSRQGRTEFSRGVY 345

Query: 155 RRTADGALEATKFPREGAGLLSSLIETDGLVELGESVVRVEPGDAV 200
                G L      ++G+G+L S+ E + L+E+  ++  V+ G++V
Sbjct: 346 AFNTQGQLTVRTTGKQGSGILRSMSEANCLIEIAPAIDTVKVGESV 391


>PA3914 [H] COG0303 Molybdopterin biosynthesis enzyme Pae Pseudomonas
           aeruginosa
          Length = 407

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 13/176 (7%)

Query: 38  ALKQVARRYDLILTTGGVSTGEEDHVRAGIEQAGSLVLWRMAIKPGRPVAMGIIDGTPLI 97
           AL   A  +D ++T+GGVS GEEDH++  I + G + LWR+AI+PG+P A G + G P +
Sbjct: 240 ALSLAASEWDALVTSGGVSVGEEDHLKRAIAELGEVNLWRLAIQPGKPFAFGSVAGKPWL 299

Query: 98  GLPGNPVASFVTFVHVVRPTVLALSG---AVPSPL-LPMPVRAAFSYKKKSGRREYVRVS 153
           GLPGNP A+ VT + V RP +L   G    VP PL LP    AAF + +   RR+Y+R  
Sbjct: 300 GLPGNPAAALVTALLVARPFLLRQQGLFDVVPRPLALP----AAFDWPQPRARRQYLRAR 355

Query: 154 LRRTADGALEATKFPREGAGLLSSLIETDGLVELGESVVRVEPGDAVGFLGYADLL 209
           L    D        P++G+ +L +    DGL  + E    +  GDA+ FL ++ L+
Sbjct: 356 L----DERGRVEIHPQQGSAMLLAASWADGLAVI-ERGATLGVGDAIDFLPFSALM 406


>STM0846 [H] COG0303 Molybdopterin biosynthesis enzyme Sty Salmonella
           typhimurium LT2
          Length = 413

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 1/167 (0%)

Query: 35  MSAALKQVARRYDLILTTGGVSTGEEDHVRAGIEQAGSLVLWRMAIKPGRPVAMGIIDGT 94
           + AA      + D+++++GGVS GE D+ +  +E+ G +  W++AIKPG+P A G +  +
Sbjct: 235 LRAAFIDADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNS 294

Query: 95  PLIGLPGNPVASFVTFVHVVRPTVLALSGAVPSPLLP-MPVRAAFSYKKKSGRREYVRVS 153
              GLPGNPV++ +TF  +V+P +  L G   S + P   VR A   KK  GR ++ R  
Sbjct: 295 WFCGLPGNPVSAALTFYQLVQPLLAKLGGNTASAVPPRQRVRTASRLKKTPGRLDFQRGI 354

Query: 154 LRRTADGALEATKFPREGAGLLSSLIETDGLVELGESVVRVEPGDAV 200
           L+R+A+G LE T    +G+ + SS    +  + L      VEPG+ V
Sbjct: 355 LQRSANGELEVTTTGHQGSHIFSSFSLGNCFIVLERERGNVEPGEWV 401