BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0135.0005.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   188   4e-48
PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   187   7e-48
CC0645 Non COG                                                        185   4e-47
MT3179 [K] COG1733 Predicted transcriptional regulators MtC Myco...   129   4e-30
Rv3095 [K] COG1733 Predicted transcriptional regulators Mtu Myco...   128   6e-30

>PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 159

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 112/148 (75%)

Query: 1   MKWDALEEEPCSVARTVAVIGDRWSLLVLRECFLRIRRFDDFQASLGITRHLLADRLKKL 60
           MKW  + E PCS+AR++A++GDRW+LL+LR CFL +RRFD+FQASLG+TR +LADRL +L
Sbjct: 1   MKWQEVGETPCSMARSLAILGDRWTLLILRNCFLGMRRFDEFQASLGVTRQVLADRLSRL 60

Query: 61  VRFGVLRKIPYQEAPKRYEYILTQKGLDLYPIIMSIVHWGNVHMVDSRGRPMLHEHKTCK 120
           V  G L+K+PYQE P RYEY LT+ G DL+P+++++ +WG+  + + RG P+ + HK C 
Sbjct: 61  VEAGALKKVPYQERPPRYEYRLTEMGHDLHPVLLALANWGDRWLDEGRGAPVEYVHKACG 120

Query: 121 KMFDPVMVCSECGEPLSAKAVHVHPGPG 148
             F P MVC ECGEP+ ++ V   PGPG
Sbjct: 121 HKFRPTMVCPECGEPVGSRDVTAVPGPG 148


>PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 157

 Score =  187 bits (476), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 113/146 (77%)

Query: 1   MKWDALEEEPCSVARTVAVIGDRWSLLVLRECFLRIRRFDDFQASLGITRHLLADRLKKL 60
           M+W+ L E+PCS+AR +A++GDRW+LLVLR+CFL +RRFDDF+ SLG+TRH+LADRLK+L
Sbjct: 1   MRWEELSEQPCSLARVLAILGDRWTLLVLRDCFLGVRRFDDFERSLGVTRHVLADRLKRL 60

Query: 61  VRFGVLRKIPYQEAPKRYEYILTQKGLDLYPIIMSIVHWGNVHMVDSRGRPMLHEHKTCK 120
           V   +L K+PYQE P R EY LT+KG++LYP I+S+V+WG+ H+    G P+ H HK C 
Sbjct: 61  VEAEILAKVPYQERPLREEYRLTEKGMELYPAILSLVNWGDRHLAGVEGPPLEHVHKHCG 120

Query: 121 KMFDPVMVCSECGEPLSAKAVHVHPG 146
           +    V+VCSECGEPL A+ V V  G
Sbjct: 121 QHMHGVLVCSECGEPLHARDVTVREG 146


>CC0645 Non COG
          Length = 188

 Score =  185 bits (470), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 112/148 (75%)

Query: 1   MKWDALEEEPCSVARTVAVIGDRWSLLVLRECFLRIRRFDDFQASLGITRHLLADRLKKL 60
           MKW+ L  +PCS++R +AVIGDRW+L++LR+CFL +RRF+ FQ  LG++R ++ DRL+ L
Sbjct: 37  MKWEDLSAQPCSISRALAVIGDRWTLMILRDCFLGVRRFELFQKRLGVSRTIVTDRLRTL 96

Query: 61  VRFGVLRKIPYQEAPKRYEYILTQKGLDLYPIIMSIVHWGNVHMVDSRGRPMLHEHKTCK 120
           V  GVLR++PYQ+ P R+EY LT+KGLDL+P++M+I H+G++H   + G P+L  HK C 
Sbjct: 97  VEAGVLRRVPYQDHPVRHEYRLTEKGLDLHPVVMAIAHFGDIHYAGAEGPPVLRRHKGCG 156

Query: 121 KMFDPVMVCSECGEPLSAKAVHVHPGPG 148
             F PV VCSECGEP+SA+ V    G G
Sbjct: 157 CDFHPVQVCSECGEPVSARQVEARAGAG 184


>MT3179 [K] COG1733 Predicted transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 158

 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 87/137 (63%)

Query: 12  SVARTVAVIGDRWSLLVLRECFLRIRRFDDFQASLGITRHLLADRLKKLVRFGVLRKIPY 71
           SV R + ++G+RW+LL+LRE F  +RRF     +LGI R  L+ RL+ LV  G+  ++PY
Sbjct: 14  SVGRALELVGERWTLLILREAFFGVRRFGQLARNLGIPRPTLSSRLRMLVELGLFDRVPY 73

Query: 72  QEAPKRYEYILTQKGLDLYPIIMSIVHWGNVHMVDSRGRPMLHEHKTCKKMFDPVMVCSE 131
              P+R+EY LT+ G DL+  I+ ++ WG+ ++    G P+   H TC +  DP ++C+ 
Sbjct: 74  SSDPERHEYRLTEAGRDLFAAIVVLMQWGDEYLPRPEGPPIKLRHHTCGEHADPRLICTH 133

Query: 132 CGEPLSAKAVHVHPGPG 148
           CGE ++A+ V   PGPG
Sbjct: 134 CGEEITARNVTPEPGPG 150


>Rv3095 [K] COG1733 Predicted transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 158

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 87/137 (63%)

Query: 12  SVARTVAVIGDRWSLLVLRECFLRIRRFDDFQASLGITRHLLADRLKKLVRFGVLRKIPY 71
           SV R + ++G+RW+LL+LRE F  +RRF     +LGI R  L+ RL+ LV  G+  ++PY
Sbjct: 14  SVGRALELVGERWTLLILREAFFGVRRFGQLARNLGIPRPTLSSRLRMLVEVGLFDRVPY 73

Query: 72  QEAPKRYEYILTQKGLDLYPIIMSIVHWGNVHMVDSRGRPMLHEHKTCKKMFDPVMVCSE 131
              P+R+EY LT+ G DL+  I+ ++ WG+ ++    G P+   H TC +  DP ++C+ 
Sbjct: 74  SSDPERHEYRLTEAGRDLFAAIVVLMQWGDEYLPRPEGPPIKLRHHTCGEHADPRLICTH 133

Query: 132 CGEPLSAKAVHVHPGPG 148
           CGE ++A+ V   PGPG
Sbjct: 134 CGEEITARNVTPEPGPG 150