BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0134.0017.p         (135 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4059 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mit...    96   3e-20
BMEI0252 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mi...    90   1e-18
HI0478 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mito...    86   2e-17
SMc02502 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mi...    85   5e-17
atpC [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitoch...    84   8e-17

>mll4059 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial
           delta subunit) Mlo Mesorhizobium loti
          Length = 135

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 4   FHFDLVSPEKLAFSGEVDQVDVPGVEGDFGVLAGHAPVVATVRPGILTI-TAAGKREKVI 62
           F F+LVSPE+L  S +V+ V +PG EG+  V+A HAPV+ T++PG++T+ TA+G  E+ +
Sbjct: 5   FKFELVSPERLLVSEQVESVVIPGAEGEMTVMAHHAPVMTTIKPGVVTVKTASGGEERYV 64

Query: 63  VLGGLAEVSDKGLTVLADVATALADIDRAKFAETIN 98
           V GG A++   G T+LA+ A A+ D+DRA  A  I 
Sbjct: 65  VFGGFADIVPAGCTLLAESAVAVKDVDRADLARRIQ 100


>BMEI0252 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial
           delta subunit) Bme Brucella melitensis
          Length = 135

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 4   FHFDLVSPEKLAFSGEVDQVDVPGVEGDFGVLAGHAPVVATVRPGILTITAA-GKREKVI 62
           F F+LVSPE+L  S +V +V +PG EG    LAGH+P++ T+ PG++++  A GK +  +
Sbjct: 5   FQFELVSPERLLLSAQVTEVVIPGSEGYLTALAGHSPLMTTIMPGVVSVKLADGKTDSYV 64

Query: 63  VLGGLAEVSDKGLTVLADVATALADIDRAKFAETINEMQEKLAEKEGSE 111
           V GG A+++ +G TVLA+ AT + DID A     I+  ++ L +   +E
Sbjct: 65  VFGGFADITPQGCTVLAESATHVDDIDPADIQHRIDHARKVLEDASSNE 113


>HI0478 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial
           delta subunit) Hin Haemophilus influenzae
          Length = 142

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 1   MATFHFDLVSPEKLAFSGEVDQVDVPGVEGDFGVLAGHAPVVATVRPGILTITAA-GKRE 59
           MATF+  +VS E+  F GEV Q+ V GVEG+ G+L GH P++  ++PGI+  T   G  E
Sbjct: 1   MATFNLTIVSAEQKIFEGEVKQIQVTGVEGELGILPGHTPLLTAIKPGIVKFTLKDGNEE 60

Query: 60  KVIVLGGLAEVSDKGLTVLADVATALADIDRAKFAETINEMQEKLAEKEGSELDH 114
            + V GG  EV    +TVLAD+A   +++D  +  E   + +E +  + GS+ DH
Sbjct: 61  VIYVSGGFLEVQPNIVTVLADIAIRGSELDADRIHEAKRKAEENIVSR-GSDADH 114


>SMc02502 [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial
           delta subunit) Sme Sinorhizobium meliloti
          Length = 136

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 5/121 (4%)

Query: 3   TFHFDLVSPEKLAFSGEVDQVDVPGVEGDFGVLAGHAPVVATVRPGILTI-TAAGKREKV 61
           +F+F+LVSPE+L  S +V +V +P  EG+  V+A HAP + T++PG++ + TAAGK E+ 
Sbjct: 6   SFNFELVSPERLLVSEKVTEVVIPATEGEMTVMANHAPTMTTIKPGVVAVKTAAGKTERY 65

Query: 62  IVLGGLAEVSDKGLTVLADVATALADIDRAKFAETINEMQEKLAEKEGSELDHAIERLDH 121
            V GG A++   G T+LA+ A  + ++D        N ++   AE EG+  D    RL+ 
Sbjct: 66  AVFGGFADILPSGCTLLAESAVHVDELDPTVLE---NRIEAARAELEGAG-DEKKTRLEQ 121

Query: 122 F 122
           F
Sbjct: 122 F 122


>atpC [C] COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial
           delta subunit) Eco Escherichia coli K12
          Length = 139

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 3   TFHFDLVSPEKLAFSGEVDQVDVPGVEGDFGVLAGHAPVVATVRPGILTITAAGKREKVI 62
           T+H D+VS E+  FSG V+++ V G EG+ G+  GHAP++  ++PG++ I      E+ I
Sbjct: 4   TYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFI 63

Query: 63  VL-GGLAEVSDKGLTVLADVATALADIDRAKFAETINEMQEKLAEKEGSELDHAIERLDH 121
            L GG+ EV    +TVLAD A    D+D A+  E   + +E ++   G ++D+A    + 
Sbjct: 64  YLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHG-DVDYAQASAEL 122

Query: 122 FKSIQQ----ELNTTAM 134
            K+I Q    EL   AM
Sbjct: 123 AKAIAQLRVIELTKKAM 139