BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0133.0044.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20367 [K] COG1309 Transcriptional regulator Sme Sinorhizobium...    70   4e-12
BS_yfiR [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis    69   9e-12
Rv1534 [K] COG1309 Transcriptional regulator Mtu Mycobacterium t...    64   2e-10
MT1585 [K] COG1309 Transcriptional regulator MtC Mycobacterium t...    64   2e-10
aq_2179 [K] COG1309 Transcriptional regulator Aae Aquifex aeolicus     63   5e-10

>SMb20367 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 230

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 17/160 (10%)

Query: 1   MPKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQ 60
           MP+VK ++  +R  E++  AE  F  QG+  TT+ DVI+++ +S G  Y +F  KE L++
Sbjct: 1   MPRVK-KSPDVRTNELIGCAERLFFEQGYENTTVNDVIREANVSKGAFYHYFVSKEALLE 59

Query: 61  AIGE--SRHGRDSALLALKDPSDDVLQSLRSIARTFLGD--LQREEGLRARRVALQLWAE 116
           A+    + H         +DPS D +  L ++   F G   L+ E   + +     L+  
Sbjct: 60  AVAARMAHHSLKELQTVFEDPSLDAVGQLNAL---FAGSRRLKVEMAPQLKNTFNALFKP 116

Query: 117 ALRDDVVR----DQVVSGIRQPIALIVDLLRRGQKSGAID 152
              +++V     D  VS +  P   + +LLRRG K G++D
Sbjct: 117 ---ENIVLYHRIDAAVSAVTLP--FLTELLRRGHKEGSLD 151


>BS_yfiR [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis
          Length = 205

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 2   PKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQA 61
           PKV  E    R+ EIL+AA+  F R+GF  TT++DV+++SG S G +Y +F+  EE+ + 
Sbjct: 3   PKVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRR 62

Query: 62  IGESRHGRDSALLALKDPSDDVLQSLRSIARTFLGDLQREEGLRA-----RRVALQLWAE 116
           I E+  G D  L  L   ++   QS+ +   ++L +L   EGLR        V  +    
Sbjct: 63  IIET--GLDEGLRKLDKSAEH--QSVWASISSYLDELT--EGLRDVADTLAPVQFEYLVT 116

Query: 117 ALRDDVVRDQVVSGIRQPIALIVDLLRRGQKSGAIDPHLQPRGA-ARAMVAMFQGIVLQR 175
           A R++  R  +       +     LL++G   G   P +QP    A+  + M  GI+   
Sbjct: 117 AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQP-VQPLATIAKFFLNMNDGIIQNA 175

Query: 176 LW 177
           L+
Sbjct: 176 LY 177


>Rv1534 [K] COG1309 Transcriptional regulator Mtu Mycobacterium
          tuberculosis H37Rv
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 12 RREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQAI 62
          RR+EIL AA+I FA +GFH TT+ D+ KQ+GL+ G IY +F  K++L  A+
Sbjct: 20 RRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70


>MT1585 [K] COG1309 Transcriptional regulator MtC Mycobacterium
          tuberculosis CDC1551
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 12 RREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQAI 62
          RR+EIL AA+I FA +GFH TT+ D+ KQ+GL+ G IY +F  K++L  A+
Sbjct: 20 RRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70


>aq_2179 [K] COG1309 Transcriptional regulator Aae Aquifex aeolicus
          Length = 192

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 5/66 (7%)

Query: 13 REEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQAIGES-----RH 67
          +E+IL +A   F+++GF +TTI+D+ K+ G++ G IY HFT KEE+I+++ ES     RH
Sbjct: 15 KEKILSSALKLFSKKGFKETTIKDIAKEVGITEGAIYRHFTSKEEIIKSLLESITKELRH 74

Query: 68 GRDSAL 73
            + AL
Sbjct: 75 KLEVAL 80