BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0039.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport... 159 1e-38 AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport... 154 2e-37 BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo... 149 1e-35 SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transpor... 142 1e-33 RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport... 142 1e-33 >RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 313 Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 164/285 (57%), Gaps = 1/285 (0%) Query: 5 PNFVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTG-SF 63 P +SQL GL G+ A++S GL +I+G L V+N AHGA+FM+G ++ SY + Sbjct: 28 PAMLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALFMLGAVLTWMGLSYLDLPY 87 Query: 64 ILAVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVV 123 + ++A L V +GV +ER ++R Y H LL+T G+ + + R ++ Sbjct: 88 WVMLVAAPLAVGVVGVVIERTMLRFIYKLDHLYGLLLTLGVTLVIEGVFRAVYGVSGLPY 147 Query: 124 PPPALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDS 183 P LL G T LGF+ P YR VV A + ++ +T+LG +RAG E+ +V++ Sbjct: 148 STPELLSGATDLGFMVLPNYRAWVVVASLTVCFATWFMIEKTKLGAYLRAGTENPKLVEA 207 Query: 184 LGINVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGA 243 G+NV + + +G G A FAG++ APV+ ++P +G ++++ F VVVIGG+GS G+ Sbjct: 208 FGVNVPLMVTLTYGFGVALAAFAGVLAAPVIQISPLMGQNMIITVFAVVVIGGMGSILGS 267 Query: 244 ILGGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQ 288 I+ GL G I +T + P + ++F M LVL++RP GL G + Sbjct: 268 IVTGLGLGVIEGLTKVVYPQASSTVVFVIMALVLLVRPAGLFGRE 312 >AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 156/272 (57%), Gaps = 1/272 (0%) Query: 18 GALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTG-SFILAVIAGSLFVMA 76 G+ AL+S GL +I+G L V+N AHGA +M+G + ++ Y G +F +A+I L V Sbjct: 23 GSFYALLSLGLAVIFGLLRVINFAHGAQYMLGAFVAFLGLQYFGINFWMALIVTPLVVAL 82 Query: 77 LGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVVPPPALLQGITSLG 136 G +ER ++ Y LL TFGL + R ++ + Q P L G T+LG Sbjct: 83 FGAIVERFMLSRLYDLDPLYGLLFTFGLALVVEGTFRWLYGAAGQPYSVPRELAGGTNLG 142 Query: 137 FLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDSLGINVYRVFMIVF 196 F+F P YR VV I VA A + ++ +TRLG +RA E+ +V + GINV + + + Sbjct: 143 FMFLPNYRAFVVVISLVACIATWALIEKTRLGSYLRAATENPTLVQAFGINVPVLLTLTY 202 Query: 197 GIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGAILGGLIAGEIISI 256 +GA AGF G++ AP+ ++P +G ++++ F VVV+GG+GS GAI+ G + G + Sbjct: 203 ALGAGLAGFTGVLAAPIYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGL 262 Query: 257 TSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQ 288 T +F P + +++F M VL++RP GL G Sbjct: 263 TKVFYPEASNIVIFVIMAFVLLIRPAGLFGKD 294 >BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 295 Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 162/281 (57%), Gaps = 3/281 (1%) Query: 10 QLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTG-SFILAVI 68 QL GL G+ A++S GL II+G L ++N AHGA +M+G + GY+ S+ G S+ A++ Sbjct: 15 QLLVGLINGSFYAMLSLGLAIIFGLLRIINFAHGAQYMLGAFVGYLLLSWLGISYWPALV 74 Query: 69 AGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVVPPPAL 128 L V G +ER+ + Y+ LL TFGL + R + + Q P Sbjct: 75 LAPLIVGLGGAIIERVALSRLYNLDPLYGLLFTFGLALVIEGTFRYYYGAAGQPYAVPPS 134 Query: 129 LQGITSLGFLFYPTYR-LAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDSLGIN 187 L G +LGF+F P YR VV + V LG +L++ +T+LG +RA E+ +V + GIN Sbjct: 135 LAGGRNLGFMFLPNYRAWVVVASLFVCLGT-WLLIEKTKLGAYLRAATENPTLVKAFGIN 193 Query: 188 VYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGAILGG 247 V + + +G+ AG AGI+ AP+ ++P +G +I++ F VVV+GG+GS GAI+ G Sbjct: 194 VPLLLTFTYALGSALAGLAGIMAAPIYQVSPLMGSNIIIVVFAVVVVGGMGSILGAIITG 253 Query: 248 LIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQ 288 + G +T +F P + +++F M +VL++RP GL G + Sbjct: 254 YVLGIAEGLTKVFYPEASSIVVFVIMAIVLLVRPAGLFGKE 294 >SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 295 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 164/283 (57%), Gaps = 1/283 (0%) Query: 7 FVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTG-SFIL 65 F+ QL GL G+ AL+S GL II+G L V+N AHGA +M+G + ++ SY G + Sbjct: 12 FLGQLLIGLINGSFYALLSLGLAIIFGLLRVINFAHGAQYMLGAFMAWLLLSYLGIGYWP 71 Query: 66 AVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVVPP 125 A+I L V +G +ER ++R Y LL TFGL + R ++ + Q Sbjct: 72 ALILAPLLVGLIGAVIERTMLRRLYTLDPLYGLLFTFGLALTIEGTFRYLYGASGQPYAT 131 Query: 126 PALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDSLG 185 PALL G +LGF+F P YR V+ V +L++ +T+LG +RA E+ V+V S G Sbjct: 132 PALLMGGANLGFMFLPIYRGWVIVFSLVICLGTWLMIEKTKLGSYLRAATENPVLVQSFG 191 Query: 186 INVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGAIL 245 INV + + +G+GA A AG++ AP+ ++P +G +I++ F VVV+GG+GS GAI+ Sbjct: 192 INVPFLLTLTYGLGAALAAIAGVLAAPIYQVSPLMGSNIIIVVFAVVVVGGMGSIMGAIV 251 Query: 246 GGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQ 288 G + G +T +F P + +++F M +VL+LRP GL G Sbjct: 252 TGYLLGIAEGLTKVFYPEASNIVIFVIMAIVLLLRPAGLFGRD 294 >RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 315 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 164/310 (52%), Gaps = 30/310 (9%) Query: 8 VSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTGSFILAV 67 V L NG++ G LL ++SSGLT+I+ +GVLN AH + +M+G Y YV Y G F A+ Sbjct: 5 VINLLNGISYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMLGAYFAYVVSGYLG-FWAAL 63 Query: 68 IAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVVPPPA 127 I L V ALG +ER +R + H +LL TFGL E V+L++ + P Sbjct: 64 IVAPLLVGALGALVERFGLRTVHRYGHVAELLFTFGLAYLIEEGVKLVWGLPAVPYRVPE 123 Query: 128 LLQG-ITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDSLGI 186 L G + +L +P YR ++ + + L +FL+L RTR+G++++A + MV++LG Sbjct: 124 ALDGPLFTLFTSSFPKYRAFMMLVSLLMLVGIFLLLTRTRIGLVIQAALTHPDMVEALGH 183 Query: 187 NVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGAILG 246 NV RVFM+VFG G AG AG+I P + + FVV V+GG+GS GA + Sbjct: 184 NVPRVFMLVFGGGCALAGLAGVIGGNAFVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFIA 243 Query: 247 GLIAGEI--------ISITSM-------FNPGYAYVMLF-------------AAMTLVLV 278 L+ G I +S+TS+ NP + ++ + L+L+ Sbjct: 244 SLLIGCIQTFAVTLDVSVTSLLGKLGVALNPDVPLISVWNLTIAQVAPVLPYLLLVLMLI 303 Query: 279 LRPHGLLGTQ 288 RP GL+GT+ Sbjct: 304 FRPRGLMGTR 313