BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0133.0014.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5093 [T] COG1493 Serine kinase of the HPr protein, regulates ...    63   3e-10
AGc51 [T] COG1493 Serine kinase of the HPr protein, regulates ca...    60   2e-09
BMEI2034 [T] COG1493 Serine kinase of the HPr protein, regulates...    58   5e-09

>mll5093 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism Mlo Mesorhizobium loti
          Length = 153

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 1   MSDNSSVHASAVLVGERAVLIRGPSGAGKSRLAFDLILAGRTGALPPAILVGDDRVHLDT 60
           ++   ++H +A+L+GER VLI GPSGAGK+ LA  L+   R   L  + L+GDDR+    
Sbjct: 5   VAQPENIHGTAILIGERGVLITGPSGAGKTTLALTLLDHCRARGL-FSRLIGDDRLLAAA 63

Query: 61  AGEQLWVRPVQQLAGLIEIRGLGIRHCPFAGEAVVGLVVDLAADDAERLPPPEALTIRLN 120
              +L  R    +AGL E+ G   R  PF    V+ L V L    AE     E ++  + 
Sbjct: 64  RAGRLVCRVPAPIAGLAEVPGFMPRRLPFEPAGVIDLHVRL-VPKAEMARFQEEISEPVA 122

Query: 121 GVLIPRIPVG--IGFQPLPLVVAALTTT 146
           G  +PRI +        LP V+A L+ T
Sbjct: 123 GCPVPRIDLAERNAATALPAVMARLSIT 150


>AGc51 [T] COG1493 Serine kinase of the HPr protein, regulates
          carbohydrate metabolism Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 154

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 2  SDNSSVHASAVLVGERAVLIRGPSGAGKSRLAFDLILAGRTGALPPAILVGDDRVHLDTA 61
          ++  ++HA+A++V    +L  GPSG+GKS LAF  +       LP A L+ DD++ +   
Sbjct: 3  AERFNLHATAIVVDGTGILFTGPSGSGKSELAFSFLTEAERCGLPAA-LIADDQIFVYRD 61

Query: 62 GEQLWVRPVQQLAGLIEIRGLGI 84
          GE +     + +AGL+E+RG GI
Sbjct: 62 GETIIAERPEAIAGLLELRGSGI 84


>BMEI2034 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism Bme Brucella melitensis
          Length = 159

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 2   SDNSSVHASAVLVGERAVLIRGPSGAGKSRLAFDLILAGRTGALPPAILVGDDRVHLDTA 61
            + S +HA+ + +  R V+I G SGAGK+ LA  LI          A LV DDR  L   
Sbjct: 5   EERSGLHATTLQLLGRGVMIMGRSGAGKTELALTLIERA-ASRREEAFLVADDRTLLHRE 63

Query: 62  GEQLWVRPVQQLAGLIEIRGLGIRHCPFAGEAVVGLVVDLA-ADDAERLPPPEALTIRLN 120
           G++L       LAG +EIRG G+   P+     + LVV L   D+AER P  E       
Sbjct: 64  GDRLIASVPTALAGGVEIRGAGLFRIPYRVATPLDLVVLLVNGDEAERYPGKERWI--FE 121

Query: 121 GVLIPRI 127
            V +PR+
Sbjct: 122 EVSLPRL 128