BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0039.p         (222 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport...    70   3e-12
lin2558 [K] COG1309 Transcriptional regulator Lin Listeria innocua     64   2e-10
SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor...    64   3e-10
RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport...    64   4e-10
ML0815 [K] COG1309 Transcriptional regulator Mle Mycobacterium l...    63   4e-10

>AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 402

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%)

Query: 131 HALNAALEAGTNDAPAVVQKLKEKPIDDALFGPVVVRADGRAIHNMYIFKVKSSSASKSK 190
           H L A  +AGT+DA AV + +KE P++D       V A+GR IH+MY+ +VK    SK  
Sbjct: 314 HYLKAIEKAGTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQP 373

Query: 191 WDLLEQVGVLSGPEAFRPLDQGGCSVVE 218
           WD  + +  + G EAF    + GC +V+
Sbjct: 374 WDYYKVLATIPGKEAFMDPTKSGCPLVK 401


>lin2558 [K] COG1309 Transcriptional regulator Lin Listeria innocua
          Length = 202

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 1   MQMRESRKEAVSRHKRELILDAARSVFAEEGLEGASLRAIATRAGYTPAALYFHFDSKEA 60
           M+ + +R E +   +R+ ILD AR +F E+G    S R IA  A  T  ALY HF+ KE+
Sbjct: 1   MEKKRTRAEELGITRRK-ILDTARDLFMEKGYRAVSTREIAKIAKITQPALYHHFEDKES 59

Query: 61  IYAEVLRQSLVSLGEAVSAAVATTRGAKQKLHAAGMGFFRYYAEHPRDLDLGFYLFRGGM 120
           +Y EV+R+   ++   +   +   +  +++LH   +       EHP ++ L  +     M
Sbjct: 60  LYIEVVRELTQNIQVEMHPILQLNKPKEEQLHDMLIMLIE---EHPTNILLMIHDILNEM 116

Query: 121 KPAG 124
           KP  
Sbjct: 117 KPEN 120


>SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Sme Sinorhizobium meliloti
          Length = 401

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%)

Query: 133 LNAALEAGTNDAPAVVQKLKEKPIDDALFGPVVVRADGRAIHNMYIFKVKSSSASKSKWD 192
           L A  +AGT++  AV ++L   P+DD       V  +GR IH+MY+ +VK    SK  WD
Sbjct: 315 LKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVKKPDESKEPWD 374

Query: 193 LLEQVGVLSGPEAFRPLDQGGCSVVE 218
             + +  + G EAF    Q GC +V+
Sbjct: 375 YFKVLATIPGKEAFIDPAQSGCELVK 400


>RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 402

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 133 LNAALEAGTNDAPAVVQKLKEKPIDDALFGPVVVRADGRAIHNMYIFKVKSSSASKSKWD 192
           + A   AGT+D   V+ +LK+  ++D  F    +RADGR +H+MY+ +VK+ + SK  WD
Sbjct: 317 IKAVAAAGTDDPDKVIAQLKKTQLND-FFSKGTIRADGRYVHDMYLMQVKTPAESKKPWD 375

Query: 193 LLEQVGVLSGPEAFRPLDQGGCSVVE 218
            ++ V  + G +AF    +  C +++
Sbjct: 376 YMKIVATIPGDQAFTTPAESKCPLLK 401


>ML0815 [K] COG1309 Transcriptional regulator Mle Mycobacterium leprae
          Length = 228

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 5   ESRKEAVSRHKRE-LILDAARSVFAEEGLEGASLRAIATRAGYTPAALYFHFDSKEAIYA 63
             R   +SR KR   +L  A  VF + G   A +  IA RAG +   LY HF SK  +Y 
Sbjct: 29  NQRSNRLSRDKRRGQLLIVASDVFVDHGYHAAGMDEIADRAGVSKPVLYQHFSSKLELYL 88

Query: 64  EVLRQSLVSLGEAVSAAVATTRGAKQKLHAAGMGFFRYYAEH 105
            VL + + +L  +V  A+ TT   +Q+LHAA   FF +  EH
Sbjct: 89  AVLERHMNNLVSSVQQALRTTTNNRQRLHAAVQAFFDFI-EH 129