BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0018.p         (227 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2885 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    81   1e-15
BH2958 [K] COG1309 Transcriptional regulator Bha Bacillus halodu...    67   4e-11
DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus rad...    64   3e-10
CAC0032 [K] COG1309 Transcriptional regulator Cac Clostridium ac...    62   1e-09

>PA2885 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 198

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 7/190 (3%)

Query: 34  PKSERSRDLILHSAAQLFRRQGFSATTLRQIAARAKIKAGSIYYHFDSKEQILDEVLDRG 93
           P+S R +  +L +AA LFR +G+  TT+R +A+   I++GSI++HF SK++IL  V++  
Sbjct: 13  PESARGK--LLQTAAHLFRSKGYERTTVRDLASAVGIQSGSIFHHFKSKDEILRSVMEET 70

Query: 94  LRHVFETVKNSVERAGKVSHRRKIGLAIEAHLVALL-ETSDFTSANIRIYGQLPEQLKKP 152
           + +    ++ ++  A  +   R +GL I   L +++  T +  +  +  +  L  + +  
Sbjct: 71  ILYNTALMRAALADAEDL-RERVLGL-IRCELQSIMGGTGEAMAVLVYEWRSLSAEGQAY 128

Query: 153 HRPLRRAYAEYWDQLFIDARRAGEIRADMEVVPLRMFVIGALNWTIEWFRLENRDAVLEL 212
              LR  Y + W  +  +AR AG  + D  +  LR F+ GAL+WT  WFR E   ++ +L
Sbjct: 129 ILGLRDIYEQMWLDVLGEARLAGYCQGDPFI--LRRFLTGALSWTTTWFRPEGPMSLDQL 186

Query: 213 ARRTETLIFE 222
           A     L+ +
Sbjct: 187 AEEALALVIK 196


>BH2958 [K] COG1309 Transcriptional regulator Bha Bacillus halodurans
          Length = 215

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 39  SRDLILHSAAQLFRRQGFSATTLRQIAARAKIKAGSIYYHFDSKEQILDEVLDRGLRHVF 98
           +++ I+ +A  LF   GF A T+ +I   +    G  Y++F SK+++L  + D  + +V 
Sbjct: 5   TKERIIETALLLFEEHGFHAVTVDRIVQESGTSKGGFYHNFKSKDELLYTIHDSFITYVL 64

Query: 99  ETVKNSVERAGKVSHRRKIGLAIEAHLVALLETSDFTSANIRIYGQ----LPEQLKKPHR 154
           E  + + E+    + R      + A + + +   DF   ++ ++ Q    L     K  +
Sbjct: 65  EKAREAYEKYETPAER------LHATVRSFVMMFDFYRPHVTVFYQESLYLSSDYFKDIK 118

Query: 155 PLRRAYAEYWDQLFIDARRAGEIRADMEVVPLRMFVIGALNWTIEWFRLENRDAVLELAR 214
             R  Y +   +L  +   AGE R ++ V    M + G +NWT +W++     +V E+A 
Sbjct: 119 KKRDQYKQLMFRLVKEGIDAGEFREEIPVPITSMAIFGMINWTYKWYKTSGMYSVAEIAD 178

Query: 215 RTETLIFEGV 224
               L+   V
Sbjct: 179 IYADLVLHAV 188


>DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus radiodurans
          Length = 197

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 33  TPKSERSRDLILHSAAQLFRRQGFSATTLRQIAARAKIKAGSIYYHFDSKEQILDEVLDR 92
           T  ++  R+ I   A++LF  +G+ AT++R +A +  ++ GS+Y H   KE++L E++ R
Sbjct: 2   TETTKPRREQIHDVASRLFSERGYHATSMRDLAGQLGMQGGSLYAHISGKEELLVEIV-R 60

Query: 93  GLRHVFETVKNSVERAGKVSHRRKIGLAIEAHLVALLETSDFTSANIRIYGQLPEQLKKP 152
           G    F+    S+ R   +    K+  A+  H+  + +  D  +     +  L  +    
Sbjct: 61  GASQQFDEALFSL-RDVNLPADEKLREAMFRHIQVVADNMDSATVFFHEWKHLSAEPYAQ 119

Query: 153 HRPLRRAYAEYWDQLFIDARRAGEIRADMEVVPLRMFVIGALNWTIEWFRLENRDAVLEL 212
               R     ++  L     R G  RAD++V      ++ A+NWT  W+R   R +  ++
Sbjct: 120 VVAWRDTIDIFYRDLVAQGVRDGTFRADLDVRAAANLILSAVNWTYTWYRPGGRLSPRDV 179

Query: 213 ARRTETLIFEGV 224
           A +   ++  G+
Sbjct: 180 AEQFADMLLSGL 191


>CAC0032 [K] COG1309 Transcriptional regulator Cac Clostridium
           acetobutylicum
          Length = 189

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 38  RSRDLILHSAAQLFRRQGFSATTLRQIAARAKIKAGSIYYHFDSKEQILDEVLDRGLRHV 97
           ++++ I  SA  +F + G+   T+ +IA+ AK+  G++YYHF SKE+I   V+  G+  +
Sbjct: 3   KTKNAIFKSALMIFSKNGYDGATMDEIASNAKVAKGTLYYHFKSKEEIFKYVISEGMNVI 62

Query: 98  FETVKNSVERAGKVSH-RRKIGLAIEAHLVALLETSDFTSANI-RIYGQLPEQLKKPHRP 155
            E ++   + AGK S+   K+       +  +    DF    + +++GQ   QL+   R 
Sbjct: 63  REEME---QEAGKESNPVNKLKAICRFQIGMIFRNRDFFKVLMSQLWGQDSRQLE--LRK 117

Query: 156 LRRAYAEYWDQLFIDARRAGEIR 178
           + + Y E  ++   DA   G I+
Sbjct: 118 VIKDYIEIIERYLKDAMEKGYIK 140