BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0007.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6405 [U] COG2948 Type IV secretory pathway, VirB10 components...   138   3e-33
CC2685 [U] COG2948 Type IV secretory pathway, VirB10 components ...   112   3e-25
RSc2575 [U] COG2948 Type IV secretory pathway, VirB10 components...    84   7e-17
mlr6955 [U] COG2948 Type IV secretory pathway, VirB10 components...    79   3e-15
mll9603 [U] COG2948 Type IV secretory pathway, VirB10 components...    75   5e-14

>mlr6405 [U] COG2948 Type IV secretory pathway, VirB10 components Mlo
           Mesorhizobium loti
          Length = 409

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 75/84 (89%)

Query: 1   VDFHTWQLLKGVALATLIGVGTQLSIGNDESDLVKALRESTQLTTNRAGQRLVERELDVQ 60
           VDFHTWQL+KGVALATL+GVGT+LS G +ESDLVKA+RESTQ   ++AGQR+ E+ L++Q
Sbjct: 324 VDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAIRESTQQNISQAGQRITEKNLNIQ 383

Query: 61  PTIAVRPGWPLRVIVSKDLVLKPY 84
           PTI VRPGWPLRVIV KDLVL+PY
Sbjct: 384 PTIIVRPGWPLRVIVHKDLVLRPY 407


>CC2685 [U] COG2948 Type IV secretory pathway, VirB10 components Ccr
           Caulobacter vibrioides
          Length = 418

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 76/85 (89%)

Query: 1   VDFHTWQLLKGVALATLIGVGTQLSIGNDESDLVKALRESTQLTTNRAGQRLVERELDVQ 60
           VDFHTW+LLKGV L+TL+GVGT+LS+G+ ESDLV+A+R+STQ + ++AGQ++V ++L VQ
Sbjct: 332 VDFHTWRLLKGVVLSTLLGVGTKLSLGDGESDLVRAIRQSTQQSASQAGQQIVAKQLAVQ 391

Query: 61  PTIAVRPGWPLRVIVSKDLVLKPYQ 85
           PT+ VRPGWPLR IV KDL+L+P++
Sbjct: 392 PTLRVRPGWPLRAIVHKDLILRPWR 416


>RSc2575 [U] COG2948 Type IV secretory pathway, VirB10 components Rso
           Ralstonia solanacearum
          Length = 425

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 1   VDFHTWQLLKGVALATLIGVGTQLSIGNDESD---LVKALRESTQLTTNRAGQRLVEREL 57
           VD+H  ++  G AL TL+GVG +L+   +  D   +V A R+S Q + N+ GQ +  R +
Sbjct: 328 VDYHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNM 387

Query: 58  DVQPTIAVRPGWPLRVIVSKDLVLKPYQ 85
           ++QPT+  RPG P+R+IV++DLVL+PYQ
Sbjct: 388 NIQPTLTERPGLPVRIIVNRDLVLRPYQ 415


>mlr6955 [U] COG2948 Type IV secretory pathway, VirB10 components Mlo
           Mesorhizobium loti
          Length = 171

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 58/84 (69%)

Query: 1   VDFHTWQLLKGVALATLIGVGTQLSIGNDESDLVKALRESTQLTTNRAGQRLVERELDVQ 60
           VD+H  +L    AL T++ VG +      ESD+V+ALR     + ++ GQ++V+R+L++ 
Sbjct: 86  VDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIA 145

Query: 61  PTIAVRPGWPLRVIVSKDLVLKPY 84
           PT+ +RPG  +RV+V++DL+L+PY
Sbjct: 146 PTLTIRPGVNVRVVVTRDLMLEPY 169


>mll9603 [U] COG2948 Type IV secretory pathway, VirB10 components Mlo
           Mesorhizobium loti
          Length = 378

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 63/84 (75%)

Query: 1   VDFHTWQLLKGVALATLIGVGTQLSIGNDESDLVKALRESTQLTTNRAGQRLVERELDVQ 60
           VD+H  +L K  AL+T++ VG Q    + +SD+V+ALR     + ++ GQ++V+++LD+ 
Sbjct: 293 VDYHWGELFKAAALSTVLSVGAQAGSSDQDSDIVRALRSGASDSVSQVGQQVVQQQLDMA 352

Query: 61  PTIAVRPGWPLRVIVSKDLVLKPY 84
           PT+ VRPG+P+RV+V++DLVL+PY
Sbjct: 353 PTLTVRPGFPVRVLVTRDLVLEPY 376