BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0131.0012.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 285 7e-77 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 276 2e-74 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 276 4e-74 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 248 7e-66 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 86 9e-17 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 129/242 (53%), Positives = 175/242 (72%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 +I DHQ KPD+ + IAR+WYD +QVD I+++ S+VGLAVQ ++ EKKK+ I + Sbjct: 70 IITADHQNKPDVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATS 129 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 + GK C+PY W +DT ALAVGT +V++GGD+W+F+T DYAFG+SLE+ + V Sbjct: 130 ELTGKQCTPYGFHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVES 189 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 GGKVLG+VR P +T D SSF+LQAQAS AK++G+A + +N IK AAEFG+ AGGQ+ Sbjct: 190 KGGKVLGSVRHPLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQR 249 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 +AALL + ++H +GL AAQGL LT FYWD DD++R + KR+F + RMP M QAG YS Sbjct: 250 LAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYS 309 Query: 241 SV 242 +V Sbjct: 310 AV 311 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 172/242 (71%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 V+ DHQ KPDI + IAR+WYD +QVD I+++ S+V LAVQ I+ EKKK+ I T Sbjct: 70 VVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTGAATT 129 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 + GK CSPY W +DT +LAVGT +VK+GGDSWFF+T DYAFG+SLE++ V + Sbjct: 130 ELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGNYVKE 189 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NGG V+GAVR P AT D SSF+LQAQ+S AK+IG+A + +N IK AAEFG+ GGQ+ Sbjct: 190 NGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQR 249 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 +AALL + ++H +GL AAQGL LT FYW+ D+++ ++ KR+ + +MP M AG YS Sbjct: 250 LAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVHAGTYS 309 Query: 241 SV 242 +V Sbjct: 310 AV 311 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 127/242 (52%), Positives = 173/242 (71%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 V+ DHQ K D+ + IAR+WYD +QVD I+++ S+VGLAVQ ++ +KKK+ + T Sbjct: 71 VVTADHQNKADVASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATT 130 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 + GK CSPY W +DT +LAVGT +VK+GGDSWFF+T DYAFG+SLE++ S V Sbjct: 131 ELTGKQCSPYGFHWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKA 190 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NGGKVLG+VR P AT D SSF+LQAQ+S AK+IG+A + +N IK A+EFG+ AGGQ+ Sbjct: 191 NGGKVLGSVRHPLATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQR 250 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 +AALL + ++H +GL AAQGL LT FYWD DD++R++ +R+ + MP M G YS Sbjct: 251 LAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYS 310 Query: 241 SV 242 +V Sbjct: 311 AV 312 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 119/243 (48%), Positives = 164/243 (67%), Gaps = 1/243 (0%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 ++ DHQ K DI A+ AR W D +D++V SA LA+ +A EKK++FI G Sbjct: 73 LVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTA 132 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 + C+PY I + +DT ALA GT VVK+GG SWFF+T DYAFGHSLE D +A+V Sbjct: 133 RLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKA 192 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NGG V+G+V+ P + D SS++LQAQASKA+I+G+A + N IK A EFG+ + Sbjct: 193 NGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFGI-TKTMK 251 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 +A LL I D+HS+GL A+GLL+T S+YWDM+D TR+++ RYF+KM +MP+ QA YS Sbjct: 252 IAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSSLQAADYS 311 Query: 241 SVT 243 +V+ Sbjct: 312 AVS 314 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 11 DIGATI--ARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGATD-FHGKFC 67 D+G + AR+ + DQV ++ S + A+ ++NEKK L I S G TD G C Sbjct: 91 DVGTGVQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIV-SGGHTDTITGSDC 149 Query: 68 SPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTKNGGKVLG 127 + T A A + + G W FIT DYAFGH+L+K A+A + K GG + G Sbjct: 150 KWNVYRVCNTTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITG 209 Query: 128 AVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQM--AALL 185 P T D S+++++A+A+ ++ + + N +K A+FG+ G+QM A L Sbjct: 210 NELTPLGTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI---GKQMHIAGLQ 266 Query: 186 ALITDIHSIGLSAAQGLLLTTSFYW 210 + + ++ A G+ + +YW Sbjct: 267 QELESLEAMPPEARVGIWM-FEWYW 290