BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0012.p         (195 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20914 [C] COG4313 Protein involved in meta-pathway of phenol ...   194   8e-50
PA5325 [C] COG4313 Protein involved in meta-pathway of phenol de...    62   1e-09

>SMb20914 [C] COG4313 Protein involved in meta-pathway of phenol degradation
           Sme Sinorhizobium meliloti
          Length = 336

 Score =  194 bits (494), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 121/170 (71%), Gaps = 3/170 (1%)

Query: 3   GGQLAIGVTGLFGRSSADLARTLTAAVGPLATTRTGSFGDSITSVGDLYPQATLKWSAGV 62
           G Q A+ +  + GR+SA +  TL    GP   T +G   +S T VGDL PQ TLKW+ GV
Sbjct: 113 GAQAAVSLLAVAGRNSACVDATL---AGPGGGTISGERCESYTGVGDLLPQFTLKWNEGV 169

Query: 63  HNFMTYVTGDVPVGAYSPSSLANLGIGHAAIDAGGGYTYFNPQAGHEFSAVGGFTYNFKN 122
           +N+MTYVTGD+P+GAY P  LAN G+GH AID G GYTY NP+ G EFS VGG TYNF+N
Sbjct: 170 NNYMTYVTGDIPIGAYDPDRLANTGLGHGAIDGGVGYTYLNPETGREFSIVGGMTYNFEN 229

Query: 123 QDTQYQNGIDFHLDWGASQFLSKQVFVGLVGYAYQQVTDDFGQHPVLGAF 172
            DT YQNGID H+DW ASQFL++ V VG+VGYA+QQ+T D G+   LG F
Sbjct: 230 PDTDYQNGIDGHVDWAASQFLNEHVHVGVVGYAFQQLTGDSGEGATLGDF 279


>PA5325 [C] COG4313 Protein involved in meta-pathway of phenol degradation
           Pae Pseudomonas aeruginosa
          Length = 316

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 31  PLATTRTGSFG--DSITSVGDLYPQATLKWSAGVH-NFMTYVTGDVPVGAYSPSSLANLG 87
           P    R  +FG  D   S+GD      + W  G        V   VP G Y    LAN  
Sbjct: 113 PYLRQRVAAFGLSDERESMGDTTFAPIILWDMGKDLTLAAAVEVTVPTGKYDAERLANTS 172

Query: 88  IGHAAIDAGGGYTYFNPQAGHEFSAVGGFTYNFKNQDTQYQNGIDFHLDWGASQFLSKQV 147
                      +T+  P    E S    +++N +N DT Y++G  FH D+ AS  ++  +
Sbjct: 173 NNFYTYKPLFSFTWL-PTERTELSLKATYSFNMENHDTDYRSGQIFHFDYSASYRVTDNL 231

Query: 148 FVGLVGYAYQQVTDDFGQHPVLGAFG 173
            +GL GY  +Q TDD      +  FG
Sbjct: 232 RLGLNGYYLKQTTDDKQNGETVRVFG 257