BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0076.p (213 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5429 [E] COG1027 Aspartate ammonia-lyase Pae Pseudomonas aerug... 264 1e-70 HP0649 [E] COG1027 Aspartate ammonia-lyase Hpy Helicobacter pylo... 259 4e-69 jhp0594 [E] COG1027 Aspartate ammonia-lyase jHp Helicobacter pyl... 259 4e-69 BMEI0109 Non COG 243 2e-64 Cj0087 [E] COG1027 Aspartate ammonia-lyase Cje Campylobacter jejuni 242 4e-64 >PA5429 [E] COG1027 Aspartate ammonia-lyase Pae Pseudomonas aeruginosa Length = 474 Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/202 (65%), Positives = 156/202 (77%) Query: 3 ASNLIEATSDLGAFVLFSGVLKRVAVKLSKICNDLRLLSSGPRTGIGEIRLPAVQAGSSI 62 A++LIEATSD+GAFVLFSG+LKR AVKLSKICNDLRLLSSGPRTGI EI LP Q GSSI Sbjct: 266 AADLIEATSDMGAFVLFSGMLKRTAVKLSKICNDLRLLSSGPRTGINEINLPPRQPGSSI 325 Query: 63 MPGKVNPVIPEVVNQVAFLVIGHDLTVTMCAEGGQLQLNAFEPTIGYCVLSSLRMLTAAV 122 MPGKVNPVIPE VNQVAF VIG+DL +T+ AEGGQLQLN EP I Y + S+R+L A+ Sbjct: 326 MPGKVNPVIPEAVNQVAFEVIGNDLALTLAAEGGQLQLNVMEPLIAYKIFDSIRLLQRAM 385 Query: 123 DTLTKRCVDGIEADRERCRSLVQGSIGLITALAPSLGYEASSRVARRALKENRSVADIVL 182 D L + C+ GI A+ ERC LV+ SIGL+TAL P +GYE S+R+A+ AL+ R V ++V Sbjct: 386 DMLREHCITGITANVERCHELVEHSIGLVTALNPYIGYENSTRIAKTALESGRGVLELVR 445 Query: 183 EEKLLTEAELNQLLELEAMTRP 204 EEKLL EA L +L E M P Sbjct: 446 EEKLLDEATLADILLPENMIAP 467 >HP0649 [E] COG1027 Aspartate ammonia-lyase Hpy Helicobacter pylori 26695 Length = 468 Score = 259 bits (661), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 123/204 (60%), Positives = 156/204 (76%) Query: 1 VLASNLIEATSDLGAFVLFSGVLKRVAVKLSKICNDLRLLSSGPRTGIGEIRLPAVQAGS 60 V+A+NLIEAT GA+V SGVLKR+AVKLSK+CNDLRLLSSGPR G+ EI LP +Q GS Sbjct: 257 VMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKMQPGS 316 Query: 61 SIMPGKVNPVIPEVVNQVAFLVIGHDLTVTMCAEGGQLQLNAFEPTIGYCVLSSLRMLTA 120 SIMPGKVNPVIPEVVNQV F VIG+DL+V + AEGGQLQLN FEP I Y + S +L Sbjct: 317 SIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGR 376 Query: 121 AVDTLTKRCVDGIEADRERCRSLVQGSIGLITALAPSLGYEASSRVARRALKENRSVADI 180 A++TLT +CV+GI A+ + C V SIG++TAL P +GYE S+ +A+ ALK +RS+ DI Sbjct: 377 AIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDI 436 Query: 181 VLEEKLLTEAELNQLLELEAMTRP 204 LE+K+LT+ +L+ + + E M P Sbjct: 437 ALEKKILTKEQLDDIFKPENMLSP 460 >jhp0594 [E] COG1027 Aspartate ammonia-lyase jHp Helicobacter pylori J99 Length = 468 Score = 259 bits (661), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 123/204 (60%), Positives = 156/204 (76%) Query: 1 VLASNLIEATSDLGAFVLFSGVLKRVAVKLSKICNDLRLLSSGPRTGIGEIRLPAVQAGS 60 V+A+NLIEAT GA+V SGVLKR+AVKLSK+CNDLRLLSSGPR G+ EI LP +Q GS Sbjct: 257 VMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKMQPGS 316 Query: 61 SIMPGKVNPVIPEVVNQVAFLVIGHDLTVTMCAEGGQLQLNAFEPTIGYCVLSSLRMLTA 120 SIMPGKVNPVIPEVVNQV F VIG+DL+V + AEGGQLQLN FEP I Y + S +L Sbjct: 317 SIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGR 376 Query: 121 AVDTLTKRCVDGIEADRERCRSLVQGSIGLITALAPSLGYEASSRVARRALKENRSVADI 180 A++TLT +CV+GI A+ + C V SIG++TAL P +GYE S+ +A+ ALK +RS+ DI Sbjct: 377 AIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDI 436 Query: 181 VLEEKLLTEAELNQLLELEAMTRP 204 LE+K+LT+ +L+ + + E M P Sbjct: 437 ALEKKILTKEQLDDIFKPENMLSP 460 >BMEI0109 Non COG Length = 483 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 147/184 (79%) Query: 3 ASNLIEATSDLGAFVLFSGVLKRVAVKLSKICNDLRLLSSGPRTGIGEIRLPAVQAGSSI 62 A NL+EA+ D GAFV FSG+L+R+AVKLSKI NDLRLLSSGPR+G+GEIRLPAVQ GSSI Sbjct: 269 AGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSI 328 Query: 63 MPGKVNPVIPEVVNQVAFLVIGHDLTVTMCAEGGQLQLNAFEPTIGYCVLSSLRMLTAAV 122 MPGKVNPVIPE VNQV + VIG+DLTVTM AE GQLQLNAFEP I Y +LSS+R+L A+ Sbjct: 329 MPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAM 388 Query: 123 DTLTKRCVDGIEADRERCRSLVQGSIGLITALAPSLGYEASSRVARRALKENRSVADIVL 182 L +RCVDGIEA+ ERCR+ + SI L TAL P +GY ++ +A++AL ++V ++ + Sbjct: 389 TNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAI 448 Query: 183 EEKL 186 + L Sbjct: 449 SKGL 452 >Cj0087 [E] COG1027 Aspartate ammonia-lyase Cje Campylobacter jejuni Length = 468 Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 114/203 (56%), Positives = 148/203 (72%) Query: 2 LASNLIEATSDLGAFVLFSGVLKRVAVKLSKICNDLRLLSSGPRTGIGEIRLPAVQAGSS 61 +A +LIEAT D GA+V SGVLKRVA KLSK+CNDLRLLSSGP+ G+ EI LP +Q GSS Sbjct: 260 VAEDLIEATQDTGAYVQISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSS 319 Query: 62 IMPGKVNPVIPEVVNQVAFLVIGHDLTVTMCAEGGQLQLNAFEPTIGYCVLSSLRMLTAA 121 IMPGKVNPVIPEVVNQV + VIG D+TVT EGGQLQLN FEP + Y + +S+ ML A Sbjct: 320 IMPGKVNPVIPEVVNQVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKA 379 Query: 122 VDTLTKRCVDGIEADRERCRSLVQGSIGLITALAPSLGYEASSRVARRALKENRSVADIV 181 + TL +C+DGI A+ + C V S+G++TAL P +GYE S+ +A+ A+ + VADI Sbjct: 380 MYTLADKCIDGITANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIA 439 Query: 182 LEEKLLTEAELNQLLELEAMTRP 204 LE LL++ +++++L M P Sbjct: 440 LERGLLSKEQIDEILTPSNMLNP 462