BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0058.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3677 Non COG                                                         82   3e-16
RSc0590 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    74   2e-13
STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella ty...    59   3e-09
mll1839 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...    58   1e-08

>CC3677 Non COG
          Length = 186

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 70/129 (54%)

Query: 7   APGYLFRRMQQIAVALFIEECKAFDLTPVQYAALVTISTHPGIDATRLSAVIAFDRSTLG 66
           +P +L  R+ Q+A+ ++ EEC    +T  Q+A L  ++ + G+  T L      DRSTL 
Sbjct: 17  SPSHLLHRVLQLALDIYAEECGNAGVTQRQFAVLAAVAENEGVTQTALVRATGIDRSTLA 76

Query: 67  NVIERLQAKEFIVRKPAPEDKRVKLLYLTKAGAAVLSDIMPSVDKAQARMLQPLKPADRK 126
           +++ R+  K  + R+ + ED R   + LT AG   L  I P V  A AR+L  LKP+ R 
Sbjct: 77  DMVARMITKGHLERQRSSEDARANSVRLTDAGREALEAIRPMVAMADARILALLKPSKRD 136

Query: 127 TLLALLTQL 135
             L LL+ +
Sbjct: 137 GFLDLLSDM 145


>RSc0590 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 178

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 69/127 (54%)

Query: 9   GYLFRRMQQIAVALFIEECKAFDLTPVQYAALVTISTHPGIDATRLSAVIAFDRSTLGNV 68
           GY  RR Q      F+   +A+++TP +++A+  I+ +P +  T L+ ++   RS    +
Sbjct: 47  GYAVRRAQLRVYEDFVRSLQAWNITPPRFSAMTVIAHNPDLKLTELAGILGVARSGAVLL 106

Query: 69  IERLQAKEFIVRKPAPEDKRVKLLYLTKAGAAVLSDIMPSVDKAQARMLQPLKPADRKTL 128
           ++ L+A   + R P+P D+R   L LT  GAA L DI   V    AR+   L   +R+TL
Sbjct: 107 VDTLEAMGMVERLPSPVDRRAFRLALTDKGAATLRDITEVVVAHDARVTAHLSADERRTL 166

Query: 129 LALLTQL 135
           L LL +L
Sbjct: 167 LELLNKL 173


>STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella typhimurium
           LT2
          Length = 134

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 10  YLFRRMQQIAVALFIEECKAFDLTPVQYAALVTISTHPGIDATRLSAVIAFDRSTLGNVI 69
           +L R++ Q   A +  E    +LT  QYA +  I+ HPGI+   L+      ++TL  ++
Sbjct: 9   HLLRQLFQQHTARWQHELP--ELTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEML 66

Query: 70  ERLQAKEFIVRKPAPEDKRVKLLYLTKAGAAVLSDIMPSVDKAQARMLQPLKPADRKTLL 129
            R++ +  + R+  P DKR + +YLT  G  +L+  +P  D+     L  L   +R+   
Sbjct: 67  SRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLTAAIPLGDRVDDEFLGRLSAEEREQFT 126

Query: 130 ALLTQLV 136
            L+ +++
Sbjct: 127 QLVRKMM 133


>mll1839 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 143

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%)

Query: 2   DAVYTAPGYLFRRMQQIAVALFIEECKAFDLTPVQYAALVTISTHPGIDATRLSAVIAFD 61
           DA+    GY  +R    A+  F  E     L PV Y  L  I   PGI A  L  ++   
Sbjct: 5   DALDAQIGYNLKRASAFALNDFAVELTEAGLRPVTYGMLALIDERPGIRAAELCRLLGMK 64

Query: 62  RSTLGNVIERLQAKEFIVRKPAPEDKRVKLLYLTKAGAAVLSDIMPSVDKAQARMLQPLK 121
            + +  ++  L+ +  + R    EDKRV++L LT A    +      V + + R LQ L 
Sbjct: 65  SANMAPLLAELEERGLVERDDHAEDKRVRMLTLTPAARQAMPGWRRQVRRHEDRFLQRLT 124

Query: 122 PADRKT 127
             +R T
Sbjct: 125 KKERAT 130