BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0036.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc746 [TK] COG0745 Response regulators consisting of a CheY-lik... 342 4e-94 SMc02140 [TK] COG0745 Response regulators consisting of a CheY-l... 335 7e-92 mll3716 [TK] COG0745 Response regulators consisting of a CheY-li... 328 5e-90 BMEI1984 [TK] COG0745 Response regulators consisting of a CheY-l... 324 1e-88 CC0294 [TK] COG0745 Response regulators consisting of a CheY-lik... 296 3e-80 >AGc746 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 227 Score = 342 bits (878), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 167/226 (73%), Positives = 194/226 (85%) Query: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60 M +I VVEDEEAL+ LLRYNL+AEGYDV+T+ RGD+A+ RL+ER+PDL++LDWMLPG+S Sbjct: 1 MVPKIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWMLPGVS 60 Query: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 GIELCRRLR RPET++LPIIMLTARGEESERVRGLATGADDY+VKPFS PEL+ARVK +L Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180 RRA PE L++VL GDIELDRE RV R R + LGPTE+RLLEF + PGRVFSR QLL Sbjct: 121 RRARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLL 180 Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 D VWG DIY+DERTVDVH+GRLRK LN QD IRTVRGAGY+++ Sbjct: 181 DGVWGHDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226 >SMc02140 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 227 Score = 335 bits (858), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 165/227 (72%), Positives = 193/227 (85%) Query: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60 M +I VVEDEEAL+ LLRYNL+AEG++V+T+ RGD+A+ RL+ER+PDL++LDWMLPG+S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 GIELCRRLR RPET++LPIIMLTARGEESERVRGLATGADDY+VKPFS PEL+ARVK +L Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180 RRA PE L+T+L GDIELDRE RV R R + LGPTE+RLLEF + PGRVFSR QLL Sbjct: 121 RRAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLL 180 Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDD 227 D VWG DIY+DERTVDVH+GRLRK LN D IRTVRGAGY+L+ Sbjct: 181 DGVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >mll3716 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 229 Score = 328 bits (842), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 162/225 (72%), Positives = 188/225 (83%) Query: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60 ++ RI+VVEDEE L LLRYNL++EGY VE V RGD+A+ RL+E VPDL+VLDWM+P +S Sbjct: 2 IAPRIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVS 61 Query: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 GIELCRRLR RPET++LPIIMLTARGEES+RVRGL+TGADDY+VKPFS PE +ARVK LL Sbjct: 62 GIELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALL 121 Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180 RRA PE L++VL GDI LDRE RV R I LGPTE+RLLEF + HPGRVFSR QLL Sbjct: 122 RRAKPEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLL 181 Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYAL 225 D+VWG IYIDERTVDVH+GRLRK +N GR D IRT+RGAGYA+ Sbjct: 182 DNVWGETIYIDERTVDVHVGRLRKAVNNGRMPDVIRTIRGAGYAI 226 >BMEI1984 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 255 Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 188/222 (84%) Query: 4 RILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLSGIE 63 RI VVEDEEAL+ LLRYNL+AEGY V+T+ RGD+A+ L+E VPDL++LDWMLPG+SGIE Sbjct: 33 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 92 Query: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 LCRRLR RPET++LPIIMLTARGEESERVRGL+ GADDY+VKPFS PELLARVK +LRRA Sbjct: 93 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 152 Query: 124 SPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 +P L+ VL GD+ LDR++ RV R + + LGPTE+RLLE+F+ PGRVFSR QLLD V Sbjct: 153 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 212 Query: 184 WGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYAL 225 WG DIY+D+RTVDVH+GRLRK +N GR D IRTVRGAGY+ Sbjct: 213 WGPDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 254 >CC0294 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ccr Caulobacter vibrioides Length = 230 Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/226 (64%), Positives = 177/226 (78%) Query: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60 M+ +LVVEDE+AL TLL YNLD EGY V G G++A ER PDLV+LDWMLP +S Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVS 60 Query: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 GIE+CRRLR R ET+ +PIIMLTARGEE++R+RGL TGADDY+VKPFS+ EL ARV+ +L Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120 Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180 RR P +T GDI +DR RV RSG+ I LGPTE+RLL++ ++HPGRVFSREQLL Sbjct: 121 RRIRPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 D+VWG D+Y++ RTVDVHIGRLRK LN + DPIRTVR AGY+LD Sbjct: 181 DAVWGSDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLD 226