BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0025.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 224 7e-59 PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 107 1e-23 AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 89 6e-18 RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 80 3e-15 Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 75 8e-14 >mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 197 Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 117/197 (59%), Positives = 134/197 (68%), Gaps = 1/197 (0%) Query: 1 MPKPSLRDAILDAGLKEMFRTGYHGTSVRDVTAAAGAPQGSFTNHFRSKELFASEVLDRY 60 M + SLR+ +LDAG + ++ +GY VRD+ AAA A GSFTNHF SKE FA EVLDRY Sbjct: 1 MARQSLREKLLDAGFRTIWNSGYAAAGVRDIVAAADARPGSFTNHFASKEAFAGEVLDRY 60 Query: 61 FLYVRGLVAEALGDTTLTPRERLRSYLDLITGKLAHDGFTRGCLIGDFSLEASGSSEMLR 120 F YV GLV AL P RLR YLD+IT KL + RGC+IG+ SLEA+ SE LR Sbjct: 61 FTYVSGLVEAALAQDGTPPIGRLRRYLDVITSKLEAHDWARGCMIGNLSLEAAVHSEPLR 120 Query: 121 EQLDDIFREWRAPFAACIAEAQATGEIAADFDPDQLADFLLASWQGAMLRMKVERSEAAL 180 QL IF WR PFA CIAE QA G+IA F+ + LADFLL+SWQGAMLRMKVERS L Sbjct: 121 VQLVAIFERWRQPFAVCIAEGQAAGDIAKTFEAEDLADFLLSSWQGAMLRMKVERSPEPL 180 Query: 181 TRFKTIAFQTVF-KELP 196 RFK I F T F KE P Sbjct: 181 ERFKKIIFNTAFAKETP 197 >PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 196 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 1/180 (0%) Query: 7 RDAILDAGLKEMFRTGYHGTSVRDVTAAAGAPQGSFTNHFRSKELFASEVLDRYFLYVRG 66 R+ IL G + M R GYHGT V ++ AA P+GSF ++F SKE FA + L+ + Sbjct: 9 RELILAKGSEVMTRRGYHGTGVLEIVQAARIPKGSFYHYFDSKEAFAQQALEHVYAPRLA 68 Query: 67 LVAEALGDTTLTPRER-LRSYLDLITGKLAHDGFTRGCLIGDFSLEASGSSEMLREQLDD 125 A+ALGD+ +PRER LR Y +L+ + C IG S E + S + +++ Sbjct: 69 RYAQALGDSRFSPRERVLRYYGELLEHFARQEKPEYHCFIGSLSFEMAELSPPIAAKVES 128 Query: 126 IFREWRAPFAACIAEAQATGEIAADFDPDQLADFLLASWQGAMLRMKVERSEAALTRFKT 185 I + C+ +A+ GE+AAD D LA F+ +WQGA+ R KV A L F + Sbjct: 129 ILQASAQILQDCLEQAREAGELAADEDCASLAGFIGFAWQGALARFKVGAGLAPLNAFMS 188 >AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 208 Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 91/193 (47%) Query: 3 KPSLRDAILDAGLKEMFRTGYHGTSVRDVTAAAGAPQGSFTNHFRSKELFASEVLDRYFL 62 + + R ++ G++++ GY G + + P+GSF F SK+ F V++ Y Sbjct: 4 QSATRTRLISEGMRQLLAHGYEGVGIGPILKEVDVPKGSFYYFFASKDDFVVAVIEAYEQ 63 Query: 63 YVRGLVAEALGDTTLTPRERLRSYLDLITGKLAHDGFTRGCLIGDFSLEASGSSEMLREQ 122 + DT+L +RL Y + + +L DG GCL G + ++G S ++R+ Sbjct: 64 KYAHIRERLFSDTSLRALQRLSVYFETLELELKQDGPYAGCLYGVIAQTSAGRSALVRDA 123 Query: 123 LDDIFREWRAPFAACIAEAQATGEIAADFDPDQLADFLLASWQGAMLRMKVERSEAALTR 182 L F W + +AQ +IA D D L ++ +++GA++R+K AA TR Sbjct: 124 LAISFGRWETSIRELLTQAQYEDDIAGDEDVSDLCACIIEAYEGALIRVKATGDIAAFTR 183 Query: 183 FKTIAFQTVFKEL 195 F+ Q + + Sbjct: 184 FRIKGLQRLMANM 196 >RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 74/172 (43%) Query: 7 RDAILDAGLKEMFRTGYHGTSVRDVTAAAGAPQGSFTNHFRSKELFASEVLDRYFLYVRG 66 RD ILDAG + + G+ + ++ A P+GSF +F SKE F +L+RYF Sbjct: 20 RDRILDAGAELILGRGFSAVGLAEILGRAQVPKGSFYYYFDSKENFGVALLERYFQDYEA 79 Query: 67 LVAEALGDTTLTPRERLRSYLDLITGKLAHDGFTRGCLIGDFSLEASGSSEMLREQLDDI 126 V DT +T RERL Y CL S E S SE +R+ L Sbjct: 80 GVVSLFNDTRMTARERLIRYFAAWIDLHERSACEVTCLAVKLSGEVSDLSEPMRKVLSAG 139 Query: 127 FREWRAPFAACIAEAQATGEIAADFDPDQLADFLLASWQGAMLRMKVERSEA 178 AA + A G +A DP LA+ L A W G L K RS A Sbjct: 140 MTRMVERIAAAVEAGVADGSLAPVADPRGLAEGLYAMWMGGALLAKAHRSTA 191 >Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 199 Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 4/184 (2%) Query: 7 RDAILDAGLKEMFRTGYHGTSVRDVTAAAGAPQGSFTNHFRSKELFASEVLDRYFLYVRG 66 R+ +L G + + G+ G + ++ A P+GSF ++FRSKE F +L+R++ Sbjct: 10 REHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYATYHQ 69 Query: 67 LVAEALGDTTLTPRERLRSYLDLITGKLAHDGFTRGCLIGDFSLEASGSSEMLREQLDDI 126 + E L R+R+ +Y + G GCL S E SE +R +D Sbjct: 70 RLTELLQSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLSEDMRSAMDKG 129 Query: 127 FREWRAPFAACIAEAQATGEIAADFDPDQLADFLLASWQGAMLRMKVERS----EAALTR 182 R A + + + + + +P Q A L A W GA L+ K+ R+ E AL Sbjct: 130 ARGVIALLSQALENGRDSHCLTFCGEPLQQAQVLYALWLGANLQAKISRNSEPLENALAH 189 Query: 183 FKTI 186 KTI Sbjct: 190 VKTI 193