BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0023.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF0343 [M] COG2885 Outer membrane protein and related peptidogly...    85   3e-17
VC2213 [M] COG2885 Outer membrane protein and related peptidogly...    84   5e-17
mll2374_2 [M] COG2885 Outer membrane protein and related peptido...    83   1e-16
PA1041 [M] COG2885 Outer membrane protein and related peptidogly...    80   1e-15
AGc4934 [M] COG2885 Outer membrane protein and related peptidogl...    79   3e-15

>XF0343 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Xfa Xylella
           fastidiosa 9a5c
          Length = 389

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           PD+  +L    E   R P+  +E+AGHTDS G  A N+ LSERRA+ V DYL   G+ AS
Sbjct: 295 PDAVAVLKEATEILRRYPDLHVEVAGHTDSTGPAAYNKKLSERRAKVVYDYLRNNGIDAS 354

Query: 62  RFT-PIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           R   P+GYG   P+  N++  G+A+NRR E  V+
Sbjct: 355 RLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQ 388


>VC2213 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 321

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 58/92 (63%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           P +   LD+++    + P A +E+ GHTDS G EA NQ LSERRAQAV   L   G+ AS
Sbjct: 221 PATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKALEAQGIDAS 280

Query: 62  RFTPIGYGSAQPLAGNESEDGKAQNRRIEFVV 93
           R +  G G + P+A N + +G+ +NRR+E V+
Sbjct: 281 RISAKGLGESSPIASNATAEGREKNRRVELVI 312


>mll2374_2 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Mlo
           Mesorhizobium loti
          Length = 125

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 52/75 (69%)

Query: 17  RCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPASRFTPIGYGSAQPLAG 76
           +CP   +E++G+TDSDG   AN+ALSERRAQAV + LV  G+P  + +  G+G   P+A 
Sbjct: 44  KCPTLKVEVSGYTDSDGSPEANKALSERRAQAVAEALVAGGVPRQQISAAGHGEENPVAA 103

Query: 77  NESEDGKAQNRRIEF 91
           N++   KA NRRIEF
Sbjct: 104 NDTPKNKALNRRIEF 118


>PA1041 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 210

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 23  IEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPASRFTPI-GYGSAQPLAGNESED 81
           + I GHTDS G +A NQ LSERRA AV +YL+ AG+P+S    + G G +QP+A N++ +
Sbjct: 136 LSITGHTDSVGSDAYNQKLSERRANAVANYLIDAGVPSSIIVGVQGLGESQPVADNKTRE 195

Query: 82  GKAQNRRIEFVVK 94
           G+A+NRR+E ++K
Sbjct: 196 GRAENRRVEILIK 208


>AGc4934 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 220

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 23  IEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPASRFTPIGYGSAQPLAGNESEDG 82
           I+I GHTDS G    NQALSERRA +V +YL   G+   R + +G+G +QP+A N + DG
Sbjct: 145 IDINGHTDSTGSLQHNQALSERRAASVANYLGARGVDQRRISTLGFGPSQPIASNATSDG 204

Query: 83  KAQNRRIEFVV 93
           +AQNRR+E ++
Sbjct: 205 RAQNRRVEVLI 215