BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0011.p (372 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 391 e-108 BMEI0263 [E] COG0683 ABC-type branched-chain amino acid transpor... 362 e-100 AGc4394 [E] COG0683 ABC-type branched-chain amino acid transport... 358 1e-98 mll3970 Non COG 354 2e-97 SMa0576 [E] COG0683 ABC-type branched-chain amino acid transport... 338 1e-92 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/368 (53%), Positives = 250/368 (67%), Gaps = 4/368 (1%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK L AL A +V F+ +I + V GP+TG +AFG Q++ GAE A E INA+G Sbjct: 1 MKKSLLSAVALTA-MVAFSGTAWADILVGVGGPLTGPNAAFGAQLQKGAEQAAEDINAAG 59 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 G+ G+++ + + DD DPKQ SVA+K A + FV GHF S SIPASE YA+ G+LQ+ Sbjct: 60 GINGEQIKVVLGDDVSDPKQGVSVAQKFVADGVKFVVGHFNSGVSIPASEIYAENGILQV 119 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPASTNP FTER LWN R CGRDDQQG VA YIA F +A+++DKT YG+GLADE Sbjct: 120 TPASTNPQFTERGLWNTFRTCGRDDQQGAVAGAYIAANFKDAKVAVIHDKTPYGQGLADE 179 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKK++N+AGV E +YE N GDKDF+A+++++K+ + +VY GG H EAGLI+RQM+DQG Sbjct: 180 TKKSMNEAGVTEALYEGINTGDKDFSALIAKMKQAGVSIVYYGGLHTEAGLIMRQMKDQG 239 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LK +MSGD + E ASI G A GTL TF PDPRK A +V+KFRA +PE YTL Sbjct: 240 LKATMMSGDGIVSNELASIAGDAVDGTLMTFAPDPRKSPAAKDLVEKFRAAGFEPEAYTL 299 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKA-GSWDTVIGTLQYDAKGDIKQLDYVVYRWD 359 Y YAA+QV + A G DP+ V + IKA G + T IG L +D KGDI + DYV+Y W Sbjct: 300 YAYAALQVIAEGAKAAGNTDPQAVAEAIKAKGPFKTAIGELGFDEKGDITRPDYVMYTWK 359 Query: 360 --DKGGYS 365 D G +S Sbjct: 360 KGDDGKFS 367 >BMEI0263 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 376 Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/360 (49%), Positives = 242/360 (67%), Gaps = 2/360 (0%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 M+ G AL A+++ F + ++ + + P+TG + +G Q++ GAE A++++N +G Sbjct: 6 MRKTLFSGVAL-AAVIAFGGSAWADVLVGIGIPVTGPNAVYGAQIQKGAEAAIKEVNDAG 64 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 G+ G+K+A+ I DD DPKQ SVA K AA + FV GHF S +IPAS+ YA+ G+L+I Sbjct: 65 GINGEKIAITIGDDVSDPKQGISVANKFAADGVKFVIGHFNSGVTIPASQVYAENGILEI 124 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 +P +TNP +TE+ LWN R CGRDDQQG VA QYI F IA+++DKT YG+GLADE Sbjct: 125 SPGATNPQYTEQGLWNTFRTCGRDDQQGTVAGQYIFDHFKDAKIAVVHDKTPYGQGLADE 184 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKK LN+ G E +YE N G+KDF+A++++LK+ +++VY GG H EAGLI+RQM DQG Sbjct: 185 TKKKLNELGTKETLYEGVNVGEKDFSALIAKLKQAGVNVVYWGGLHPEAGLIIRQMADQG 244 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LK +SGD + E ASI G A GTL TFGPDPR A +V KFR +PE YTL Sbjct: 245 LKAQFISGDGIVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTL 304 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKA-GSWDTVIGTLQYDAKGDIKQLDYVVYRWD 359 Y+YAAVQ QAA G+ DP++V +K G + TV+G L YD KGD K YV+Y+W+ Sbjct: 305 YSYAAVQSLAQAAKAAGSNDPQEVAKAMKEKGPFKTVLGDLSYDEKGDPKLPGYVMYKWE 364 >AGc4394 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 391 Score = 358 bits (919), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 184/358 (51%), Positives = 242/358 (67%), Gaps = 1/358 (0%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK L AL A +V F + ++ IAV P+TG +AFG Q++ GAE A + INA+G Sbjct: 20 MKKSLLSAVALTA-MVAFGGSAWADVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAG 78 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 G+ G+++ + + DD DPKQ SVA K A + FV GHF S SIPASE YA+ G+L+I Sbjct: 79 GINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHFNSGVSIPASEVYAENGILEI 138 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPA+TNP+FTER LWN R CGRDDQQG +A +Y+A F +AI++DKT YG+GLADE Sbjct: 139 TPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADE 198 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKA N AGV E MYE N GDKDF+A++S++K + ++Y GG H EAGLI+RQ DQG Sbjct: 199 TKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQG 258 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LK L+SGD + E ASI G A GTL TFGPDP + +V+KF+A +PE YTL Sbjct: 259 LKAKLVSGDGIVSNELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTL 318 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRW 358 Y+YAA+Q AA G+V+P++V + +K GS+ T +G + +D KGD K YV+Y W Sbjct: 319 YSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEW 376 >mll3970 Non COG Length = 371 Score = 354 bits (908), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 193/368 (52%), Positives = 245/368 (66%), Gaps = 4/368 (1%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK L AL A +V F ++ VAGPITG +AFG Q++ GAE AV +INA G Sbjct: 1 MKKTLLSAVALTA-LVAFGGNAWADVIFGVAGPITGPNAAFGAQLQKGAEAAVAEINAKG 59 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 G+ G+++ L++ DD DPKQ SVA K + FV GHF S SIPASE YA+ +++I Sbjct: 60 GINGEQIKLEVGDDVSDPKQGISVANKFVGDGVKFVIGHFNSGVSIPASEVYAENNIVEI 119 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPA+TNP FTER LWNV R CGRDDQQG +A YIA F +A+++DKT YG+GLADE Sbjct: 120 TPAATNPKFTERGLWNVFRTCGRDDQQGSIAGAYIAANFKDAKVAVVHDKTPYGQGLADE 179 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKA+N AGV E MYE N GDKDF+A+++++K + L+Y GG H EAGLI+RQ DQG Sbjct: 180 TKKAMNAAGVKEVMYEGVNVGDKDFSALIAKMKEAGVTLIYWGGLHTEAGLIIRQSADQG 239 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LK +MSGD + E A+I G A AGTL TFGPDPR +V+KFRA+ +PE YTL Sbjct: 240 LKAPMMSGDGIVTDELAAIAGDAVAGTLNTFGPDPRLIPANKELVEKFRAQGFEPEAYTL 299 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTI-KAGSWDTVIGTLQYDAKGDIKQLDYVVYRW- 358 Y YAAVQV +AA T DP+ V + ++G + +V+G L YDAKGD K Y++Y W Sbjct: 300 YAYAAVQVVAEAAAAAKTNDPQAVAKAMHESGPFPSVLGDLAYDAKGDPKLPGYIMYEWK 359 Query: 359 -DDKGGYS 365 D G YS Sbjct: 360 KKDDGKYS 367 >SMa0576 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 363 Score = 338 bits (867), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 162/334 (48%), Positives = 226/334 (67%) Query: 25 EITIAVAGPITGGESAFGRQMKNGAEMAVEQINASGGVLGKKLALDIEDDACDPKQARSV 84 E+ I VAGP++G + G Q++ GAEMAV INA+GGVLG+++ L + DD CDP+QA + Sbjct: 21 EVLIGVAGPMSGKLAWTGTQLRRGAEMAVANINAAGGVLGQQVRLIVADDFCDPRQALAA 80 Query: 85 AEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQITPASTNPLFTERKLWNVARVCGRD 144 AEK+ A FV GH+CS +SIPAS+ YA GVLQI+P+STNP+ TE+ NV RVC RD Sbjct: 81 AEKLVADGAVFVIGHYCSGASIPASKIYAAAGVLQISPSSTNPMLTEQGHANVFRVCSRD 140 Query: 145 DQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADETKKALNKAGVIEKMYESYNKGDKD 204 D QG A Y+A + IAIL+D TTYGKGLADETKK LN GV E +Y+SY G D Sbjct: 141 DAQGHKAGNYLADHWGDSKIAILHDNTTYGKGLADETKKQLNMRGVTEAVYQSYTPGKDD 200 Query: 205 FNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQGLKTVLMSGDALADKEYASITGAAG 264 ++ V+ L+ +I ++Y+GGYH EA L++R RD+ L+SGD A + + I G A Sbjct: 201 YSVEVAALQTAHIAVLYLGGYHTEAALMVRAARDRAYPVQLISGDDTATEAFGLIAGPAA 260 Query: 265 AGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTLYTYAAVQVWTQAATKVGTVDPKQV 324 GTLFTF DPR+ AA +V++FRA+N +P+ +TL++Y A ++W QA TK ++D + V Sbjct: 261 EGTLFTFVADPRRNAEAAEVVERFRAENFEPDSWTLHSYGAAEIWAQAVTKANSLDLQAV 320 Query: 325 MDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRW 358 + ++ +DTV+G + +D KGD+ +V Y W Sbjct: 321 IAALREDQFDTVLGRIDFDKKGDLTVQSWVWYVW 354