BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0002.p         (239 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll8119 [L] COG1525 Micrococcal nuclease (thermonuclease) homolo...    98   2e-20
BMEI1096 [L] COG1525 Micrococcal nuclease (thermonuclease) homol...    97   4e-20
SMc04211 [L] COG1525 Micrococcal nuclease (thermonuclease) homol...    96   1e-19
AGc3462 [L] COG1525 Micrococcal nuclease (thermonuclease) homolo...    93   5e-19
mll0560 [L] COG1525 Micrococcal nuclease (thermonuclease) homolo...    90   5e-18

>mll8119 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs Mlo
           Mesorhizobium loti
          Length = 162

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 23  LSGPPRIVDGNTIEIEQTKIRLSGIEAPETDQICLDAHGQKWACGIAARDELIRHSNG-R 81
           L G P ++DG+TIEI   +IRL+GI+APE+ Q+CLDA G+K+ CG  A   L       R
Sbjct: 24  LVGIPSVIDGDTIEIHGQRIRLNGIDAPESAQLCLDAAGKKYRCGQRASLTLADFLEAHR 83

Query: 82  TWDCHTTGVDKYGRSLGSCFIAGEDVNAWMISSGWALSSDPHTYIIY---EVVASNAYAG 138
              C     D++ R +  C   G D+  WM+  G+A+    ++   Y   E  A  A  G
Sbjct: 84  PISCIEVDRDQFRRMVAVCTAGGIDIGEWMVRKGYAVDWPKYSAGFYAKAETDARTAKRG 143

Query: 139 LWSGAFIAPWDWRRR 153
           LW+G+F  PW+WR++
Sbjct: 144 LWAGSFDRPWEWRKQ 158


>BMEI1096 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs Bme
           Brucella melitensis
          Length = 152

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 3/129 (2%)

Query: 24  SGPPRIVDGNTIEIEQTKIRLSGIEAPETDQICLDAHGQKWACGIAARDELIRHSNGRTW 83
           SG P I+DG+T+ + +T IRL GI APE  Q C  AHG  + CG  AR++L       + 
Sbjct: 17  SGRPYIIDGDTVVLGKTHIRLKGINAPEIGQSCEGAHG-TYDCGGEARNKLRARIGRASI 75

Query: 84  DCHTTGVDKYGRSLGSCFIAGEDVNAWMISSGWALSSDPHTYIIYEVVASNAYAGLWSGA 143
            C ++G D+Y R L  CF+   D+N WM+  GWA+S     Y   E  A     G+W+G 
Sbjct: 76  RCESSGRDRYDRVLARCFLGETDLNQWMVQEGWAVSYG--NYQRDEADARRDKRGIWAGK 133

Query: 144 FIAPWDWRR 152
           F  P  WR+
Sbjct: 134 FERPSRWRK 142


>SMc04211 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs Sme
           Sinorhizobium meliloti
          Length = 195

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 5   AMITALLAIITSPACAAKLSGPPRIVDGNTIEIEQTKIRLSGIEAPETDQICLDAHGQKW 64
           A I A L     P    +LSGP    DG+++ ++  +IR+ GI+APE  Q+C       W
Sbjct: 15  AYIAAQLPAPERP-VTGELSGPASASDGDSLRLDGRRIRIEGIDAPEIGQMCRRGE-TAW 72

Query: 65  ACGIAARDELIRHSNGRTWDCHTTGVDKYGRSLGSCFIAGEDVNAWMISSGWALSSDPHT 124
            CG  AR  L+    G T  C   G D+YGR LG C   G D+   M+ SG A+S     
Sbjct: 73  DCGAQARRRLVALVAGTTTVCRLHGRDRYGRELGVCAAGGADLGREMVLSGHAVSYG--L 130

Query: 125 YIIYEVVASNAYAGLWSGAFIAPWDWRRRNKGT 157
           Y   E  A     GLW G F+ P +WRR N G 
Sbjct: 131 YRDEEETARTGRLGLWGGDFVRPQEWRRSNGGA 163


>AGc3462 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 224

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 29  IVDGNTIEIEQTKIRLSGIEAPETDQICLDAHGQKWACGIAARDELIRHSNGRTWDCHTT 88
           ++DG+T+     + RL GI+APE  Q CL   G  W CG+ AR  L R    R + C  +
Sbjct: 75  VIDGDTLSKGDERFRLLGIDAPELAQTCLRGGG-SWPCGVEARGALQRLVTAREFSCSGS 133

Query: 89  GVDKYGRSLGSCFIAGEDVNAWMISSGWALSSDPHTYIIYEVVASNAYAGLWSGAFIAPW 148
             D+YGR L  C   G+DV++ M+S+G+A++S    +   +  A     G+W+G F  P 
Sbjct: 134 SRDRYGRQLVYCTADGKDVSSEMVSAGFAVASGYFQFSAEQARARREERGIWAGEFEKPS 193

Query: 149 DWRRRNK 155
           +WRR ++
Sbjct: 194 EWRREHR 200


>mll0560 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs Mlo
           Mesorhizobium loti
          Length = 183

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 22  KLSGPPRIVDGNTIEIEQTKIRLSGIEAPETDQICLDAHGQKWACGIAARDELIRHSNGR 81
           +  G   I DG++I +   +IR+ GI+APE  Q C   +G  +ACG  AR  L+R   GR
Sbjct: 28  QTQGAAIINDGDSITLGTERIRMRGIDAPEYTQTCR-RNGVDYACGTLARQSLVRLIAGR 86

Query: 82  TWDCHTTGVDKYGRSLGSCFIAGEDVNAWMISSGWALSSDPHTYIIYEVVASNAYAGLWS 141
              C     D+YGR LG C   G D+N   + +GWA++     +   E  A  A  G+W+
Sbjct: 87  PVTCSGWQRDRYGRLLGDCKAGGTDLNRAQVEAGWAVAFGD--FESEEATARAAKVGIWA 144

Query: 142 GAFIAPWDWRRRNKGTIV 159
           G F  P DWR  + G +V
Sbjct: 145 GTFDQPQDWRDSHHGEVV 162