BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0038.p (375 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2129 [C] COG1902 NADH Ccr Caulobacter vibrioides 377 e-104 PA0840 [C] COG1902 NADH Pae Pseudomonas aeruginosa 368 e-101 CC1802 [C] COG1902 NADH Ccr Caulobacter vibrioides 321 2e-87 CAC3229 [C] COG1902 NADH Cac Clostridium acetobutylicum 151 2e-36 SMa2291 [C] COG1902 NADH Sme Sinorhizobium meliloti 151 3e-36 >CC2129 [C] COG1902 NADH Ccr Caulobacter vibrioides Length = 363 Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/361 (54%), Positives = 249/361 (68%), Gaps = 3/361 (0%) Query: 1 MSQSPLFEPFQLKSLSLPNRVVMAPMTMEASPGGVPDDDTVLHYSCRAAGGTGFLITEGT 60 MS LF+PF+ KSL LPNRVVMAPMT SPGGVP D+ +Y RA G ++TEGT Sbjct: 1 MSLDALFQPFEFKSLKLPNRVVMAPMTRSFSPGGVPTDEVAAYYRRRAENQVGLIVTEGT 60 Query: 61 TIGRPAASHNGNIPNFHAADALSGWGKVVEAVHAAGGKIAPQLWHEGMAR-KPGTGPNPD 119 + RPA+ ++ N+P FH L+ W KVV+ VHAAGGKIAPQLWH G A+ K G Sbjct: 61 GVARPASLNDANVPRFHGEKELAAWKKVVDEVHAAGGKIAPQLWHVGAAKGKDVLGKVDS 120 Query: 120 ASSEGPSVGSEGNIAMTDKHIAETLEAFAIAAVAAKRLGFDAVEIHGGHGYLVDNFFWEN 179 S + G+ MTD IA+T++AFA AA AKRLGFD VE+HG HGYL+D FFW+ Sbjct: 121 PSGLSKAGGNPFTEPMTDAEIADTIQAFATAAADAKRLGFDTVELHGAHGYLIDQFFWQG 180 Query: 180 HNKRTDRYGG-NHRNRGRFAGEVVQAIRAAVGEEFPIIMRFSQFKLEDYRAKIATSPLEL 238 N R+D +GG RGRFA E+++A+RAAVG ++P+I+R SQ+K ++Y A++A +P E+ Sbjct: 181 TNVRSDAWGGPTIGERGRFAAEILKAVRAAVGPDYPVIIRLSQWKQQEYTARLAETPKEM 240 Query: 239 EDLLAPCVDAGVDMFHASQRRFFEPEFEGSDLNLAGWAKKVTGLPTITVGSVGLKGADAL 298 E L P DAG D+FH SQRRF+EPEFEGSDLN AGWAKK+TG PTITVGSVGL G + + Sbjct: 241 EAWLQPLADAGADIFHCSQRRFWEPEFEGSDLNFAGWAKKLTGAPTITVGSVGLSG-EFI 299 Query: 299 DSLRGGETGPDRIDRIEERLANEEFDLVAVGRALLTDPAWTQKVREGRFGEMLAFDPASL 358 + G + P ID + L E+D+V VGRALL DP W K+REGR E+ AF+ A+L Sbjct: 300 AAFGGEGSQPTSIDNVIGGLERGEYDMVGVGRALLQDPEWVTKIREGRSDELKAFERAAL 359 Query: 359 G 359 G Sbjct: 360 G 360 >PA0840 [C] COG1902 NADH Pae Pseudomonas aeruginosa Length = 370 Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/361 (53%), Positives = 246/361 (68%), Gaps = 10/361 (2%) Query: 6 LFEPFQLKSLSLPNRVVMAPMTMEASPGGVPDDDTVLHYSCRAAGGTGFLITEGTTIGRP 65 LF+PF+L +L LP RVVMAPMT SPGGVP+ V +Y RAA G G +++EGTT+G Sbjct: 8 LFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHK 67 Query: 66 AASHNGNIPNFHAADALSGWGKVVEAVHAAGGKIAPQLWHEGMARKPGTGPNPDASSEGP 125 AA+ N+P F+ DAL+GW +VV+AVHA GG+I PQLWH G R+ G P+ GP Sbjct: 68 AANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGP 127 Query: 126 -SVGSEGNI---AMTDKHIAETLEAFAIAAVAAKRLGFDAVEIHGGHGYLVDNFFWENHN 181 +G + M+ I E + AFA AA A+ +G D VEIHG HGYL+D FFWE N Sbjct: 128 MEKAKDGKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSN 187 Query: 182 KRTDRYGGNHRNRGRFAGEVVQAIRAAVGEEFPIIMRFSQFKLEDYRAKIATSPLELEDL 241 +R D YGG+ NR RFA E+V+A+RAAVG +FPII RFSQ+K +DY A++ +P L + Sbjct: 188 QRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREF 247 Query: 242 LAPCVDAGVDMFHASQRRFFEPEFEGSDLNLAGWAKKVTGLPTITVGSVGLKGADALDSL 301 LAP V+AGVD+FH S RRF+ PEFEGS+LNLAGW +++TG PTITVG+VGL G++ L Sbjct: 248 LAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFLQFF 307 Query: 302 RGGETG----PDRIDRIEERLANEEFDLVAVGRALLTDPAWTQKVREGRFGEMLAFDPAS 357 G+T P ID + ERL EFDLVAVGRALL DP W KVREGR G++ F + Sbjct: 308 --GKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREA 365 Query: 358 L 358 L Sbjct: 366 L 366 >CC1802 [C] COG1902 NADH Ccr Caulobacter vibrioides Length = 430 Score = 321 bits (822), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 178/365 (48%), Positives = 220/365 (60%), Gaps = 9/365 (2%) Query: 1 MSQSPLFEPFQLKSLSLPNRVVMAPMTMEASPGGVPDDDTVLHYSCRAAGGTGFLITEGT 60 +S S LF P + L+L NRVVM+PMT SPGGVP+ +Y RA G G +ITEG Sbjct: 64 VSTSSLFAPTTVAGLALRNRVVMSPMTRRFSPGGVPNQAVADYYRRRAEAGVGVIITEGV 123 Query: 61 TIGRPAASHNGNIPNFHAADALSGWGKVVEAVHAAGGKIAPQLWHEGMARK-PGTGPNPD 119 + PAA + +IPNFH AL W + +V +AG PQLWH G R PN Sbjct: 124 AVDHPAAVDHADIPNFHGP-ALDQWKTIAASVTSAGAAFIPQLWHIGGHRSLTADPPNAS 182 Query: 120 ASSEGPS----VGSEGNIAMTDKHIAETLEAFAIAAVAAKRLGFDAVEIHGGHGYLVDNF 175 A S PS G T+ I ++A+A A A +G VEIHG HGYL+D F Sbjct: 183 APSLSPSGVYEPGKPFGTPATEVEIEAVIQAYAKGARDAAAIGASGVEIHGAHGYLIDQF 242 Query: 176 FWENHNKRTDRYGGNHRNRGRFAGEVVQAIRAAVGEEFPIIMRFSQFKLEDYRAKIATSP 235 FW N+R DRYGG+ R RFA EV++A R AVG FPI R+SQFK DY+A++ SP Sbjct: 243 FWAATNQRQDRYGGDMIERLRFATEVIKACREAVGPSFPIFFRYSQFKQVDYKARLCQSP 302 Query: 236 LELEDLLAPCVDAGVDMFHASQRRFFEPEFEGSDLNLAGWAKKVTGLPTITVGSVGLKGA 295 EL L P VDAGVD+F SQRRF+EPEFEGS LNLAGW K +TG PT+TVGSVGL G Sbjct: 303 DELAAFLQPLVDAGVDVFDCSQRRFWEPEFEGSPLNLAGWTKTLTGKPTMTVGSVGLDG- 361 Query: 296 DALDSLRGG--ETGPDRIDRIEERLANEEFDLVAVGRALLTDPAWTQKVREGRFGEMLAF 353 D + SLR G +D+++ L +FDLV VGRALL DP W +KVR+G+ + F Sbjct: 362 DVVASLREGVDVIAASSLDKLDVMLDRGDFDLVGVGRALLADPHWVEKVRDGQTDGLAGF 421 Query: 354 DPASL 358 A+L Sbjct: 422 TRAAL 426 >CAC3229 [C] COG1902 NADH Cac Clostridium acetobutylicum Length = 339 Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 167/341 (48%), Gaps = 33/341 (9%) Query: 6 LFEPFQLKSLSLPNRVVMAPMTMEASPG-GVPDDDTVLHYSCRAAGGTGFLITEGTTI-- 62 +FE + +K++ L NR+VM PM M +S G +D ++HY+ R+ GG GF+I E T I Sbjct: 3 IFEAYTIKNMCLKNRIVMPPMCMYSSDNTGNINDFHLVHYTTRSIGGVGFIIVEATGITP 62 Query: 63 -GRPAASHNGNIPNFHAADALSGWGKVVEAVHAAGGKIAPQLWHEGMARKPGTGPNPDAS 121 GR + G HA G +V+ V G KIA QL H G + +G S Sbjct: 63 NGRISDKDLGIWSEKHA----EGLSFLVKEVKKYGSKIAIQLNHSGRKYEGTSGEPVAPS 118 Query: 122 SEGPSVGSEGNIAMTDKHIAETLEAFAIAAVAAKRLGFDAVEIHGGHGYLVDNFFWENHN 181 + S+ +T I E + AF AA A++ GFDA+EIHG HGYL++ F N Sbjct: 119 ALAFDENSKTPKELTKNEIKEIILAFKAAAKRAEKAGFDAIEIHGAHGYLINQFLSPLSN 178 Query: 182 KRTDRYGGNHRNRGRFAGEVVQAIRAAVGEEFPIIMRFSQFKLEDYRAKIATSPLELEDL 241 R D YGG+ NR RF EV++A+R +E PI++R S EDYR +P E+ ++ Sbjct: 179 FRDDEYGGSTENRTRFLKEVLEAVREVWPKEKPILLRVSA---EDYRGGSGITPNEMVNI 235 Query: 242 LAPCVDAGVDMFHASQRRFFEPE---FEGSDLNLAGWAKKVTGLPTITVGSVGLKGADAL 298 + D +D+ S + G + L+ K +PTI VG + Sbjct: 236 INIVKDL-IDVVDVSSGGVAPAHINLYPGYQVKLSEVIKNECNVPTIAVGLIC------- 287 Query: 299 DSLRGGETGPDRIDRIEERLANEEFDLVAVGRALLTDPAWT 339 I+ +EE L+N DLVA+GR LL +P + Sbjct: 288 -----------DINMVEEILSNNRADLVALGRELLRNPYFV 317 >SMa2291 [C] COG1902 NADH Sme Sinorhizobium meliloti Length = 370 Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/350 (32%), Positives = 167/350 (47%), Gaps = 34/350 (9%) Query: 4 SPLFEPFQLKSLSLPNRVVMAPMT-MEASPGGVPDDDTVLHYSCRAAGGTGFLITEGTTI 62 SP+F LK L NR+ +APMT + AS GVP + V +Y A GG +++EG Sbjct: 9 SPVFTGTSLKGLDFANRLSVAPMTRISASCAGVPGERMVRYYQRFARGGFSLVMSEGIYT 68 Query: 63 GRPAASHNGNIPNFHAADALSGWGKVVEAVHAAGGKIAPQLWHEGMA------RKPGTGP 116 + A P + W + V+AVHAAGG I QL H G R GP Sbjct: 69 DKAYAQTYSGQPGLTDREQADAWRRAVDAVHAAGGSIFAQLMHGGALSQGNPYRSDTIGP 128 Query: 117 NPDASSEGPSVGSEGN--IAM----TDKHIAETLEAFAIAA-VAAKRLGFDAVEIHGGHG 169 + G G+ AM ++ IA +E FA AA +A + GFD +EIHG +G Sbjct: 129 SAIRPKGSQMTGYRGDGPYAMPREISEAEIAAAIEGFAGAARLAIEVAGFDGIEIHGANG 188 Query: 170 YLVDNFFWENHNKRTDRYGGNHRNRGRFAGEVVQAIRAAVGEEFPIIMRFSQFKLEDYRA 229 YL+D FF + N R DR+GG+ R + EV++A+RAA+G P+ +R SQ K+ D+R Sbjct: 189 YLLDQFFTDYTNHRQDRWGGDIVARFGLSLEVLKAVRAAIGPSVPLGLRLSQGKVNDFRH 248 Query: 230 KIATSPLELEDLLAPCVDAGVDMFHASQRRFFEPEFEGSDLNLAGWAKK-VTGLPTITVG 288 K A + ++ D H ++ + P FEG +++L A++ L I G Sbjct: 249 KWAEREQGAARVFEALAESPADFAHVTEFEAWRPAFEGGEISLVSLARRHAPRLFLIANG 308 Query: 289 SVGLKGADALDSLRGGETGPDRIDRIEERLANEEFDLVAVGRALLTDPAW 338 S+ + R E+ + + D++A+GR L +P W Sbjct: 309 SL------------------HELARAEQVMESGA-DMIALGRGALVNPDW 339